Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Artocarpus_20camansi_20[genbank_20GCA_5F002024485.1_202017-03-09] 396,025 sequences; 631,307,653 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq237122 154 2e-32 seq265020 141 1e-28 >seq237122 Length=485 Score = 154 bits (170), Expect = 2e-32 Identities = 304/441 (69%), Gaps = 8/441 (2%) Strand=Plus/Plus Query 59982 CGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATT 60041 ||||| || || || || ||||| ||||| ||||||||||| || ||||| || ||| Sbjct 25 CGTCTGATCGCCTTCGCCTGCGTCGAAGGGATCTTCTTCTCCGGAAGCTTCTGCGCCATT 84 Query 60042 TTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCC 60101 ||||||||||| || || |||||||||||||| || | ||||||||||||||||| || Sbjct 85 TTCTGGCTCAAGAAACGAGGCCTCATGCCGGGACTCACCTTCTCCAACGAGCTGATCTCA 144 Query 60102 CGGGACGAGGGCCTCCATCAGGAGTTTGCAGTGAC-GCTCTATTCACACCTATTGGAAAA 60160 || ||||| || || || || ||||| || | ||| || || | || | |||| Sbjct 145 CGAGACGAAGGTCTGCACTGCGACTTTGC-TTGCCTGCTTTACTCCCTCC--TGAGAAAG 201 Query 60161 ATGCCCTTCCAAG-GATATTC-ACAAGATTGTTCAGTGGGCTTGTGAAG-TGGAGAGCGA 60217 | || | | | | | || | ||| |||| | | ||| || | ||||| || Sbjct 202 AAGCTGAGCGAGGAGCGAGTCAAGGCGATCGTTC-GCGACGCGGTGGAGATCGAGAGGGA 260 Query 60218 GTTCATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTGGAGAAATGACGCA 60277 ||| || || ||||| || ||| | | || ||| ||| || |||| || Sbjct 261 GTTTGTCTGCGACGCGCTGCCGTGCGCGTTGGTCGGGATGAACGGTGCGTTGATGAGCCA 320 Query 60278 GTACATTCAGTTTGTCGCGGACCGCCTCATGGCCCAGTTTGGAGAAGGACCAATTTACGG 60337 |||||| |||| || || || || || || | | || | || | || || Sbjct 321 GTACATCGAGTTCGTTGCCGATCGGCTGTTGCGAGCGCTAGGGTACGGGAAGGTATATGG 380 Query 60338 CGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACCAACTTCTT 60397 || | ||||| || || ||||||||| ||||||||| | ||||||||||||||||| Sbjct 381 TGTTCAGAACCCGTTTGATTGGATGGAGCTGATCTCGTTGCAGGGGAAGACCAACTTCTT 440 Query 60398 TGAGAAGCGGGTCGGGGATTA 60418 ||||||||||||||||| || Sbjct 441 CGAGAAGCGGGTCGGGGAGTA 461 >seq265020 Length=820 Score = 141 bits (156), Expect = 1e-28 Identities = 300/440 (68%), Gaps = 6/440 (1%) Strand=Plus/Plus Query 59982 CGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATT 60041 ||||| || || || || ||||| ||||| ||||||||||| || ||||| || ||| Sbjct 25 CGTCTGATCGCCTTCGCCTGCGTCGAAGGGATCTTCTTCTCCGGAAGCTTCTGCGCCATT 84 Query 60042 TTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCC 60101 ||||||||||| || || |||||||||||||| || | ||||||||||||||||| || Sbjct 85 TTCTGGCTCAAGAAACGAGGCCTCATGCCGGGACTCACCTTCTCCAACGAGCTGATCTCG 144 Query 60102 CGGGACGAGGGCCTCCATCAGGAGTTTGCAGTGACGCTCTATTCACACCTATTGGAAAAA 60161 || ||||| ||||| || || || || || | ||| | | | | | | | || | Sbjct 145 CGAGACGAAGGCCTGCACTGCGATTTCGC-CTG-CCTTCTTTACTCGCTTCTGAGGAAGA 202 Query 60162 TGCCCTTCCAAG-GATATTCACAAGAT-TGTTCAGTGGGCTTGTGAAG-TGGAGAGCGAG 60218 || | | | | | ||| | | | | || | | ||| || | ||||| ||| Sbjct 203 AGCTGAGCGAGGAGCGAGTCA-AGGCTATCGTCCGCGACGCGGTGGAGATCGAGAGGGAG 261 Query 60219 TTCATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTGGAGAAATGACGCAG 60278 || | || ||||| ||||| | | || ||| ||| | |||| || Sbjct 262 TTTGTGTGCGACGCGCTACCATGTGCGTTGGTCGGGATGAACGGCGCCTTGATGAGTCAA 321 Query 60279 TACATTCAGTTTGTCGCGGACCGCCTCATGGCCCAGTTTGGAGAAGGACCAATTTACGGC 60338 ||||| |||| ||||| ||||| || ||| | | || | || | ||||| Sbjct 322 TACATCGAGTTCGTCGCCGACCGGCTGTTGGGTGCGCTAGGGTACGGGAAGGTGTACGGT 381 Query 60339 GTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACCAACTTCTTT 60398 || | ||||| || || ||||||||| ||||||||| | ||||||||||||||||| Sbjct 382 GTTCAGAACCCGTTTGATTGGATGGAGCTGATCTCGTTGCAGGGGAAGACCAACTTCTTC 441 Query 60399 GAGAAGCGGGTCGGGGATTA 60418 |||||| |||||||||| || Sbjct 442 GAGAAGAGGGTCGGGGAGTA 461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545809430826000