Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Artocarpus_20camansi_20[genbank_20GCA_5F002024485.1_202017-03-09] 396,025 sequences; 631,307,653 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq237122 111 2e-19 seq8248 86.0 7e-12 seq167436 82.4 8e-11 seq75754 82.4 8e-11 seq11187 82.4 8e-11 >seq237122 Length=485 Score = 111 bits (122), Expect = 2e-19 Identities = 299/451 (66%), Gaps = 10/451 (2%) Strand=Plus/Minus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || || ||||||||||| || || |||||||||||||| | ||||||||| ||||||| Sbjct 461 TACTCCCCGACCCGCTTCTCGAAGAAGTTGGTCTTCCCCTGCAACGAGATCAGCTCCATC 402 Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTC---TCCCCAAACTGTGCCATGAGG 74579 || || || ||||||| |||| || | |||| | ||| | | | || || Sbjct 401 CAATCAAACGGGTTCTGAACACCATATA---CCTTCCCGTACCCTAGCGCTCGCAACAGC 345 Query 74580 CGATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTTG 74639 ||||| || || || | |||||||| |||| | | | ||| |||| | | Sbjct 344 CGATCGGCAACGAACTCGATGTACTGGCTCATCAACGCACCGTTCATCCCGACCAACGCG 285 Query 74640 CACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTGGACAATCTTG 74699 |||||||| || ||| || |||||| ||||| | ||| || | || ||| Sbjct 284 CACGGCAGCGCGTCGCAGACAAACTCCCTCTCGATCTCCACCGCGTCGCGAACGATCGCC 225 Query 74700 TGAATGTCTTTGGAAGGGCA-CTTTTCCCTCAGGTGAGAGTAAAGC-GTCACGGCAAACT 74757 | | || | | || ||| | |||||| | ||||||||| | || ||||| | Sbjct 224 TTGA-CTCGCTCCTCGCTCAGCTTCTTTCTCAGGAGGGAGTAAAGCAGGCA-AGCAAAGT 167 Query 74758 CCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAA 74817 | ||| ||||| |||| |||| || || || || | || || ||||| | Sbjct 166 CGCAGTGCAGACCTTCGTCTCGTGAGATCAGCTCGTTGGAGAAGGTGAGTCCCGGCATGA 107 Query 74818 GTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGA 74877 | || || ||||| | ||| || ||||| |||||| || ||||||||| ||||||| Sbjct 106 GGCCTCGTTTCTTGAGCCAGAAAATGGCGCAGAAGCTTCCGGAGAAGAAGATCCCTTCGA 47 Query 74878 CACACGCAAAGGCGACAAGGCGTTGCGCGAA 74908 | || || ||||||| || || | ||||| Sbjct 46 CGCAGGCGAAGGCGATCAGACGCTCGGCGAA 16 >seq8248 Length=2297 Score = 86.0 bits (94), Expect = 7e-12 Identities = 66/77 (86%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 79623 ACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCA 79681 |||||| ||| |||| | || |||| ||||||||||||||||||||||||||| |||| Sbjct 1041 ACTGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCA 982 Query 79682 ATTGAGCTACGAAAGCA 79698 | |||||||||| |||| Sbjct 981 ACTGAGCTACGAGAGCA 965 >seq167436 Length=640 Score = 82.4 bits (90), Expect = 8e-11 Identities = 150/217 (69%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 74963 AGGGACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTT 75022 |||||| || ||||| || || ||||||| | |||||| ||| ||||||| | | Sbjct 30 AGGGACGGTGTCGATGGCGTGAAAGAGGCGGGTCTTCTCGGCGGAGTCCTTGATGTACGA 89 Query 75023 GTCAATCATAAGTGAGTACGTCTCCGAATGAATCGACTCGTTGAACGA-CTGGTACGCGT 75081 || | | || |||| |||| || || || ||| || ||| |||| | ||| Sbjct 90 CTCCAGAAGGAGGCTGTACATCTCGGAGTGGATGTTCTCAATGC-CGATCTGGAAGCCGT 148 Query 75082 AGAAAGACCGCGCCTCTGCAATCTGTACATCCTTTGAAAAATTCATGTCGATATTCTCCA 75141 |||| | |||||||| || | || || ||||| || || | ||| ||||| | Sbjct 149 AGAAGGCGCGCGCCTCCGCGACTTGAACCTCCTTCATGAACCTCCCGGCGAGGTTCTCGA 208 Query 75142 TGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTAC 75178 |||||||||||| |||||||||||||| || || || Sbjct 209 GGACGATGCCGTCGGAGGCGGCGAAAAAGGCGAGGAC 245 >seq75754 Length=1236 Score = 82.4 bits (90), Expect = 8e-11 Identities = 70/85 (82%), Gaps = 1/85 (1%) Strand=Plus/Minus Query 79614 TAGGTCCAGACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTG 79673 || ||| || |||| ||| |||| | || |||| ||||||||||||||||||||||| Sbjct 938 TATGTCAAGCGTGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTG 879 Query 79674 CTCT-ACCAATTGAGCTACGAAAGC 79697 |||| ||||| |||||||||| ||| Sbjct 878 CTCTAACCAACTGAGCTACGAGAGC 854 >seq11187 Length=5397 Score = 82.4 bits (90), Expect = 8e-11 Identities = 65/77 (84%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 79622 GACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACC 79680 || ||||||| |||| | || |||| ||||||||||||||||||||||||||| ||| Sbjct 266 GATTGCTTTCATTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACC 325 Query 79681 AATTGAGCTACGAAAGC 79697 || ||||||| |||||| Sbjct 326 AACTGAGCTATGAAAGC 342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 544507109795000