Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Artocarpus_20camansi_20[genbank_20GCA_5F002024485.1_202017-03-09] 396,025 sequences; 631,307,653 total letters Query= NC_028663.1 Length=188632 Score E Sequences producing significant alignments: (Bits) Value seq3 545 3e-150 seq332406 145 9e-30 seq333312 123 3e-23 seq366516 95.1 1e-14 seq223344 95.1 1e-14 seq21801 95.1 1e-14 seq17565 95.1 1e-14 seq371407 91.5 2e-13 >seq3 Length=31233 Score = 545 bits (604), Expect = 3e-150 Identities = 698/959 (73%), Gaps = 2/959 (0%) Strand=Plus/Minus Query 176147 TTTACGTTGGTTGGTTTGGTGTGCTCATGATTCCATGTCTGCTCACTGCTGCAGCATGT- 176205 ||||| |||| ||||||||||| | ||||| || | | || || | | ||| Sbjct 1628 TTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTC-TGTA 1570 Query 176206 TTTATCGTTGCATTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGTA 176265 ||||| | || || ||||| || || || || ||||| || |||||||| ||||| || Sbjct 1569 TTTATTATCGCTTTCATTGCTGCCCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTT 1510 Query 176266 GCAGGATCTCTACTCTATGGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAAC 176325 | ||||||||||| ||||||||||| || || || || || | | || | || Sbjct 1509 TCTGGATCTCTACTTTATGGAAACAATATTATTTCTGGTGCCATTATTCCTACTTCTGCG 1450 Query 176326 GCAATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTAC 176385 || || || | ||||| ||||||||||||||||| || | ||||| |||||| | ||| Sbjct 1449 GCTATAGGTTTGCACTTTTACCCAATCTGGGAAGCGGCTTCTGTTGATGAATGGTTATAC 1390 Query 176386 AATGGAGGACCATACCAACTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCTTACATG 176445 ||||| || || || | | |||| | |||||| | | ||| | | ||| ||| Sbjct 1389 AATGGTGGTCCTTATGAGTTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATG 1330 Query 176446 GGACGCCAATGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATAC 176505 || || | ||||||||||||| | | || || ||||| |||||||| ||||||||| Sbjct 1329 GGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATAT 1270 Query 176506 TCTGCACCAGTATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATCT 176565 || || || || | || || | || |||||| | |||||||| | ||||||||| Sbjct 1269 TCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTATCCAATTGGTCAAGGAAGC 1210 Query 176566 TTCTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCAA 176625 || ||||| ||||||||||| || || || ||||| |||||||| ||| ||||||||||| Sbjct 1209 TTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAA 1150 Query 176626 GCAGAGCACAACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTGTGTTTGGT 176685 || ||||||||||| || ||||||||||| || ||| | || ||||| ||||| || || Sbjct 1149 GCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGC 1090 Query 176686 GGATCTCTTTTCTCAGCAATGCACGGAAGTCTTGTTACTTCTTCACTTGTTAGAGAGACA 176745 || || || ||| || ||||| || | || |||||| | | || || || Sbjct 1089 GGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACC 1030 Query 176746 ACCGAAAACGAATCACAAAACTACGGTTACAAATTCGGACAAGAAGAAGAGACATACAAC 176805 || ||||| ||||| || | ||||||| |||||| ||||| ||||| || || || Sbjct 1029 ACAGAAAATGAATCCGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTATAAT 970 Query 176806 ATTGTAGCTGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAATAAC 176865 |||||||| || || ||||| ||||| || | |||||||| ||||| |||||| || Sbjct 969 ATTGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCAAGTTTCAACAAT 910 Query 176866 TCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTGGTTTACTGCA 176925 || | | | ||||||||||| || || | || || || | || |||||||| || Sbjct 909 TCTCGTTCTTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTTACCGCT 850 Query 176926 ATGGGTGTTTGCACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCTTA 176985 | ||| || |||| ||||| |||||| | || ||||| || ||||| || ||||| | Sbjct 849 TTAGGTATTAGCACTATGGCTTTCAACTTAAATGGTTTTAATTTCAATCAATCTGTAGTT 790 Query 176986 GACAACTCTGGTAAAGTGATTCCTACATGGGGAGATATCCTTAACCGTGCAAACCTTGGT 177045 || | ||| || ||| ||| |||| |||||| |||||||||| || |||||| Sbjct 789 GATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATATCATTAACCGTGCTAATCTTGGT 730 Query 177046 ATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCTGCAGA 177104 ||||||||||||||||||||||||||||| |||||||| || ||||| |||| || ||| Sbjct 729 ATGGAAGTTATGCACGAGCGTAATGCTCATAACTTCCCTCTAGACCTAGCTGGTGTAGA 671 >seq332406 Length=435 Score = 145 bits (160), Expect = 9e-30 Identities = 205/285 (72%), Gaps = 10/285 (4%) Strand=Plus/Plus Query 176821 GGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAATAACTCAAGAAGTCTT--C 176878 ||||| ||||| || | |||||||| ||||| |||||| || || | |||| | Sbjct 1 GGTTATTTTGGCCGATTGATCTTCCAATATGCAAGTTTCAACAATTCTC--ATTCTTTAC 58 Query 176879 ACTTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTGGTTTACTGCAATGGGTGTTTGCA 176938 |||||||||| || || | || | || | || | |||||| || | ||| || || Sbjct 59 ACTTCTTCCTAGCTGCTTGGCCTATAGTAGGTATTTTGTTTACCGCTTTAGGTATTAGCG 118 Query 176939 CAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCTTAGACA---ACTCTG 176995 | ||||| |||||| | | ||||| || ||||| || | ||| | || | | || Sbjct 119 CTATGGCTTTCAACTTAGATGGTTTTAATTTCAATCAATTTGTAGTTGATAGTCAAGCTC 178 Query 176996 GTAAAGTGATTCCTACATGGGGAGATATCCTTAACCGTGCAAACCTTGGTATGGAAGTTA 177055 || || ||| ||| |||| |||||| |||||||||| || ||||||||| |||||| Sbjct 179 GT---GTAATTAATACTTGGGCTGATATCATTAACCGTGCTAATCTTGGTATGAAAGTTA 235 Query 177056 TGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCTG 177100 ||||||||||||||||||| ||||||| | ||||| | || || Sbjct 236 TGCACGAGCGTAATGCTCATGACTTCCCTGTAGACCTAGTTGGTG 280 >seq333312 Length=291 Score = 123 bits (136), Expect = 3e-23 Identities = 200/286 (70%), Gaps = 5/286 (2%) Strand=Plus/Minus Query 176368 GTTGACGAATGGCTCTACAATGGAGGACCATACCAACTCGTTGTATTCCACTTCCTTATC 176427 ||||| |||||| | |||||||| || || || | | ||| | |||||| | | Sbjct 286 GTTGATGAATGGTTATACAATGGTGGTCCTTATGAGTTAATTGCTCTACACTTCTTACTT 227 Query 176428 GGTATCTCAGCTTACATGGGACGCCAATGGGAACTTAGTTACAGACTAGG-CATGCGTC- 176485 ||| | | ||| ||||| | | ||||||||||||| | | || || |||| || Sbjct 226 GGTGTAGCTTGTTATATGGGTCATGAGTGGGAACTTAGTTTCTGTCTGGGTCATGAGTGG 167 Query 176486 ---CTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCAGCGATGGCAGTTTTCCTCG 176542 ||| | | | || || || || || || | | || | || |||||| | Sbjct 166 GAACTTAGTTTTCGTCTGGGTATTCAGCTCCTGTTGCAGTTGCTACTGCTGTTTTCTTGA 107 Query 176543 TCTATCCATTCGGTCAAGGATCTTTCTCTGATGGTATGCCTCTTGGCATTTCAGGTACAT 176602 |||||||| | |||||||| || ||||| ||||||||||| || || || ||||| | Sbjct 106 TCTATCCAATTAGTCAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTT 47 Query 176603 TCAACTTTATGTTTGTATTCCAAGCAGAGCACAACATTCTAATGCA 176648 ||||||| ||| ||||||||||||| ||||||||||| || ||||| Sbjct 46 TCAACTTCATGATTGTATTCCAAGCTGAGCACAACATCCTTATGCA 1 >seq366516 Length=3420 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 177033 TGCAAACCTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCT 177092 |||| | ||||||||||||||||||||||||||||||||||| |||||||| || ||||| Sbjct 2760 TGCACATCTTGGTATGGAAGTTATGCACGAGCGTAATGCTCATAACTTCCCTCTAGACCT 2819 Query 177093 TGCTGCTGCAGA 177104 |||| || ||| Sbjct 2820 AGCTGGTGTAGA 2831 >seq223344 Length=745 Score = 95.1 bits (104), Expect = 1e-14 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 177020 ATATCCTTAACCGTGCAAACCTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACT 177079 |||| |||||||||| || |||||||||||||||||||| |||||||||||||| |||| Sbjct 687 ATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAGCGTAATGCTCATAACT 628 Query 177080 TCCCACTTGACCTTGCT 177096 | || || ||||| ||| Sbjct 627 TTCCTCTAGACCTAGCT 611 >seq21801 Length=11800 Score = 95.1 bits (104), Expect = 1e-14 Identities = 72/85 (85%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 177020 ATATCCTTAACCGTGCAAACCTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACT 177079 ||||| ||||||||| || ||||||||||||||||| |||||||||||||||| |||| Sbjct 2980 ATATCATTAACCGTGGTAATTTTGGTATGGAAGTTATGGACGAGCGTAATGCTCATAACT 2921 Query 177080 TCCCACTTGACCTTGCTGCTGCAGA 177104 |||| || ||||| || | || ||| Sbjct 2920 TCCCTCTAGACCTAGCAGGTGTAGA 2896 >seq17565 Length=5308 Score = 95.1 bits (104), Expect = 1e-14 Identities = 72/85 (85%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 177020 ATATCCTTAACCGTGCAAACCTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACT 177079 ||||| ||||||||| || ||||||||||||||||| |||||||||||||||| |||| Sbjct 5205 ATATCATTAACCGTGGTAATTTTGGTATGGAAGTTATGGACGAGCGTAATGCTCATAACT 5264 Query 177080 TCCCACTTGACCTTGCTGCTGCAGA 177104 |||| || ||||| || | || ||| Sbjct 5265 TCCCTCTAGACCTAGCAGGTGTAGA 5289 >seq371407 Length=281 Score = 91.5 bits (100), Expect = 2e-13 Identities = 134/188 (71%), Gaps = 4/188 (2%) Strand=Plus/Minus Query 176338 CACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGAGGACCA 176397 || || ||||||||||||||||| | | ||||| |||||| | |||||||| || || Sbjct 185 CATTTTTACCCAATCTGGGAAGCGGTT-CTGTTGATGAATGGTTATACAATGGTGGTCCT 127 Query 176398 TACCAACTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCTTACATGGGACGCCAATGG 176457 || | |||| | |||||| | | ||| | | ||| ||||| || | ||| Sbjct 126 TATGTGTTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGG 67 Query 176458 GAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTA 176517 |||||||||| | ||||| ||||| |||||||| ||||||||| || || || || Sbjct 66 GAACTTAGTTTTCGTCTAGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGT- 8 Query 176518 TCTGCAGC 176525 |||||| Sbjct 7 --TGCAGC 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 600506914128000