Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Artocarpus_20camansi_20[genbank_20GCA_5F002024485.1_202017-03-09] 396,025 sequences; 631,307,653 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq148231 102 6e-17 seq314259 93.3 3e-14 seq107409 87.8 1e-12 seq208788 84.2 2e-11 seq5063 84.2 2e-11 seq230935 82.4 5e-11 >seq148231 Length=1271 Score = 102 bits (112), Expect = 6e-17 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||||||||| ||||| || || ||||| | || ||||| || | Sbjct 693 ATGCAGATCTTTGTGAAAACCCTTACCGGCAAGACCATTACCCTAGAAGTCGAGAGTTCG 752 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || |||| || || || || ||||| || || |||| ||| | Sbjct 753 GACACCATAGACAAC--GTGAAGGCCAAGATCCAGGACAAGGAGGGGATTCCCCCGGACC 810 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || | || || ||||| || || ||||| |||| || | |||| ||||||||| Sbjct 811 AGCAGAGGCTGATCTTCGCCGGCAAGCAGTTGGAGGACGGTCGTACCTTGGCCGATTACA 870 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| || ||||||||| | |||||||| | ||| | ||||| || Sbjct 871 ACATCCAGAAGGAGAGCACTCTTCATTTGGTCCTCCGTCTACGTGGAGG 919 Score = 87.8 bits (96), Expect = 1e-12 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| |||||||||||||| || || || || ||||| | || ||||| ||| | Sbjct 921 ATGCAGATTTTTGTGAAAACCCTCACCGGCAAGACAATTACTTTGGAGGTCGAGAGCTCG 980 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || |||| || || || || ||||| ||||| |||| ||| | Sbjct 981 GATACAATTGACAAC--GTGAAGGCCAAGATCCAGGACAAGGAAGGGATTCCCCCGGACC 1038 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCA-GCTTGTCCGATTAC 27966 |||| || | || ||||||||||| || |||| |||| |||| ||| | | || ||| Sbjct 1039 AGCAGCGTCTGATCTTTGCCGGAAAGCAGCTGGAGGACGGTCGCACGCTCG-CTGACTAC 1097 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||| || ||||||||| | ||| | || | || | ||||| || Sbjct 1098 AACATCCAGAAGGAGAGCACTCTCCATCTTGTGCTCCGCCTTCGTGGAGG 1147 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| |||||| |||| ||| ||||| || | || || || || |||||| | || Sbjct 558 GACAAGGAAGGTATTCCACCGGACCAGCAGAGGCTGATCTTCGCTGGGAAACAACTTGAA 617 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 |||| || | | | |||||||||||||||| || ||||||||| | ||| |||| | Sbjct 618 GACGGCCGAACCCTCGCCGATTACAACATCCAGAAGGAGAGCACTCTTCATCTGGTGCTT 677 Query 28003 CGTTTGCGTGGCGG 28016 ||| | ||||| || Sbjct 678 CGTCTTCGTGGAGG 691 >seq314259 Length=830 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| || || |||| ||| ||||| || | || || ||||| || || ||||| Sbjct 19 GACAAGGAGGGGATTCCCCCGGACCAGCAGAGGCTGATCTTCGCCGGCAAGCAGTTGGAG 78 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 |||| || | |||| |||||||||||||||| || ||||||||| | |||||||| | Sbjct 79 GACGGTCGTACCTTGGCCGATTACAACATCCAGAAGGAGAGCACTCTTCATTTGGTCCTC 138 Query 28003 CGTTTGCGTGGCGG 28016 ||| | ||||| || Sbjct 139 CGTCTACGTGGAGG 152 Score = 87.8 bits (96), Expect = 1e-12 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| |||||||||||||| || || || || ||||| | || ||||| ||| | Sbjct 154 ATGCAGATTTTTGTGAAAACCCTCACCGGCAAGACAATTACTTTGGAGGTCGAGAGCTCG 213 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || |||| || || || || ||||| ||||| |||| ||| | Sbjct 214 GATACAATTGACAAC--GTGAAGGCCAAGATCCAGGACAAGGAAGGGATTCCCCCGGACC 271 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCA-GCTTGTCCGATTAC 27966 |||| || | || ||||||||||| || |||| |||| |||| ||| | | || ||| Sbjct 272 AGCAGCGTCTGATCTTTGCCGGAAAGCAGCTGGAGGACGGTCGCACGCTCG-CTGACTAC 330 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||| || ||||||||| | ||| | || | || | ||||| || Sbjct 331 AACATCCAGAAGGAGAGCACTCTCCATCTTGTGCTCCGCCTTCGTGGAGG 380 >seq107409 Length=3443 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| || |||||||| |||||||| || || || |||| ||||||||| | Sbjct 2648 ATGCAAATCTTCGTGAAAACCCTTACTGGAAAGACCATCACTCTTGAGGTCGAAAGCTCG 2589 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || |||| ||||| ||||| ||||| || || |||| || | Sbjct 2588 GATACCATCGACAAC--GTCAAGGCTAAAATTCAGGACAAGGAGGGGATTCCCCCAGATC 2531 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| |||| || ||||| ||||| || | || || | |||| | | ||||||| Sbjct 2530 AGCAAAGGTTGATCTTTGCTGGAAAGCAGCTTGAGGATGGCCGCACTCTCGCTGATTACA 2471 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||| || || | |||||||| | ||| | ||||| || Sbjct 2470 ACATCCAAAAGGAATCGACCCTTCATTTGGTCCTCCGTCTCCGTGGTGG 2422 >seq208788 Length=2051 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| || |||||||| |||||||| || || || | || ||||| ||| | Sbjct 331 ATGCAAATCTTCGTGAAAACCCTTACTGGAAAGACCATCACTCTCGAGGTCGAGAGCTCG 390 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || ||||| ||||| ||||| ||||| || || |||| || | Sbjct 391 GATACCATCGACAAT--GTCAAGGCTAAAATCCAGGACAAGGAGGGAATTCCCCCAGATC 448 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| |||| || || |||||||| || | || |||| |||| | | ||||||| Sbjct 449 AGCAAAGGTTGATCTTCGCCGGAAAGCAGCTTGAGGACGGTCGCACTCTCGCTGATTACA 508 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||| || || | ||||| || | ||| | ||||| || Sbjct 509 ACATCCAAAAGGAATCAACCCTTCATTTAGTCCTCCGTCTCCGTGGTGG 557 >seq5063 Length=5799 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||| |||||||| || || || || || | || ||||| ||| || Sbjct 206 ATGCAGATCTTTGTCAAAACTCTAACCGGCAAGACCATCACTTTGGAGGTCGAGAGCTCC 265 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || |||| ||||| || || ||||| ||||| |||| ||| | Sbjct 266 GACACCATCGACAAC--GTCAAGGCCAAGATCCAGGACAAGGAAGGGATTCCCCCGGACC 323 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || | || || || ||||| || || || |||| |||| | | | ||||||| Sbjct 324 AGCAGCGTCTGATCTTCGCTGGAAAGCAGTTAGAGGACGGTCGCACCCTCGCTGATTACA 383 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| || ||||||||| | ||| | || | || | ||||| || Sbjct 384 ACATCCAGAAGGAGAGCACTCTTCATCTTGTGCTCCGCCTTCGTGGAGG 432 >seq230935 Length=680 Score = 82.4 bits (90), Expect = 5e-11 Identities = 161/234 (69%), Gaps = 12/234 (5%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||| ||||| || || || |||||||| || || | || || ||||| | Sbjct 627 AATGCAAATCTTTGTTAAGACCCTCACTGGGAAGACCATCACTTTGGAGGTTGAAAGTTC 568 Query 27849 CGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 |||| || | ||| |||||| || || ||||| |||||| |||| || Sbjct 567 CGACACCATTGATAAT--GTCAAAGCCAAGATTCAGGACAAGGAAGGTATTCCCCCAGAC 510 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAG----CTTGTCCGA 27962 ||||| || | || ||||||||||| || | || |||| |||| |||| |||| Sbjct 509 CAGCAGAGGCTGATCTTTGCCGGAAAGCAGCTCGAGGACG---GCAGAACCCTTG-CCGA 454 Query 27963 TTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||||| ||||| || | || ||||| | ||| | ||||| || Sbjct 453 TTACAACATCCAGAAAGAATCAACCCTTCACTTGGTGCTCCGTCTCCGTGGTGG 400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354144810665175