Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Artocarpus_20camansi_20[genbank_20GCA_5F002024485.1_202017-03-09] 396,025 sequences; 631,307,653 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq4315 96.9 3e-15 seq5063 89.7 4e-13 seq314259 84.2 2e-11 seq148231 84.2 2e-11 seq33053 84.2 2e-11 seq230935 82.4 7e-11 seq208788 82.4 7e-11 >seq4315 Length=3911 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||| || | ||| | ||||| ||| || || ||| || || || || |||||||| Sbjct 3748 CCTCCCCTGAGGCGGAGCACCAGATGGAGGGTTGACTCCTTCTGGATGTTGTAATCGGCT 3689 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || ||||| |||| |||||||| || || || || || || ||||||||||| | || Sbjct 3688 AGGGTTCGGCCGTCCTCAAGCTGCTTTCCGGCGAAAATCAGCCGCTGCTGGTCCGGCGGA 3629 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | | ||| |||||| |||||| || | | | | || || ||||| || Sbjct 3628 ATCCCCTCCTTGTCCTGGATTTTGGCCTTCACATTGTCGATGGTGTCCGAGGACTCGACC 3569 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTT 39288 || | || || | || ||||| || ||||| || ||||| ||||||||| Sbjct 3568 TCAAGGGTTATGGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTTT 3518 >seq5063 Length=5799 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||| | | ||| | ||| | ||| || |||||||| || || || || ||||| || Sbjct 432 CCTCCACGAAGGCGGAGCACAAGATGAAGAGTGCTCTCCTTCTGGATGTTGTAATCAGCG 373 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || || |||| || | ||| || || || || || |||||||||||||| | ||| Sbjct 372 AGGGTGCGACCGTCCTCTAACTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCCGGGGGA 313 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCAC 39236 | | || |||||| ||| || |||| ||| | | | || ||| ||| || Sbjct 312 ATCCCTTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCGGAGCTCTCGAC 254 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| ||||| | || || || || ||||| |||||||| ||||| Sbjct 253 CTCCAAAGTGATGGTCTTGCCGGTTAGAGTTTTGACAAAGATCTGCAT 206 >seq314259 Length=830 Score = 84.2 bits (92), Expect = 2e-11 Identities = 160/232 (69%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||| | | ||| | ||| | ||| || |||||||| || || || || || || || Sbjct 380 CCTCCACGAAGGCGGAGCACAAGATGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCAGCG 321 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || || |||| || ||||| || || ||||| || |||||||||||||| | ||| Sbjct 320 AGCGTGCGACCGTCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCCGGGGGA 261 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATC---GCTCGACTC 39233 | | || |||||| ||| || || | ||| | | | ||||| ||| ||| Sbjct 260 ATCCCTTCCTTGTCCTGGATCTTGGCCTTCA-CGTTGTCAATTGTATCCGAGCT---CTC 205 Query 39234 CACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATC 39285 || |||| || || | || || || || ||||| ||||| || |||||| Sbjct 204 GACCTCCAAAGTAATTGTCTTGCCGGTGAGGGTTTTCACAAAAATCTGCATC 153 >seq148231 Length=1271 Score = 84.2 bits (92), Expect = 2e-11 Identities = 160/232 (69%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||| | | ||| | ||| | ||| || |||||||| || || || || || || || Sbjct 1147 CCTCCACGAAGGCGGAGCACAAGATGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCAGCG 1088 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || || |||| || ||||| || || ||||| || |||||||||||||| | ||| Sbjct 1087 AGCGTGCGACCGTCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCCGGGGGA 1028 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATC---GCTCGACTC 39233 | | || |||||| ||| || || | ||| | | | ||||| ||| ||| Sbjct 1027 ATCCCTTCCTTGTCCTGGATCTTGGCCTTCA-CGTTGTCAATTGTATCCGAGCT---CTC 972 Query 39234 CACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATC 39285 || |||| || || | || || || || ||||| ||||| || |||||| Sbjct 971 GACCTCCAAAGTAATTGTCTTGCCGGTGAGGGTTTTCACAAAAATCTGCATC 920 >seq33053 Length=1800 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 |||| || ||||| ||| || || || || || ||||| || ||||| |||| || Sbjct 1548 ACCAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCGGCCGTCCTCG 1489 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 |||||||| || || || || |||||||||||||||| || | | || |||||| | Sbjct 1488 AGCTGTTTTCCGGCGAAGATCAGACGCTGCTGGTCGGGAGGGATTCCTTCCTTGTCCTGG 1429 Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTT 39255 || || |||| | | | || ||| ||||| || || | || || | || Sbjct 1428 ATCTTGGCCTTGACATTGTCGATTGTGTCGGAGGACTCGACCTCTAGGGTTATGGTCTTG 1369 Query 39256 CCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||||| || ||||| || ||||| ||||| Sbjct 1368 CCCGTTAGGGTTTTCACGAAGATCTGCAT 1340 >seq230935 Length=680 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| || || || ||||| || || || ||||||||||| |||| |||| || Sbjct 417 CACCAAGTGAAGGGTTGATTCTTTCTGGATGTTGTAATCGGCAAGGGTTCTGCCGTCCTC 476 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| || || ||||| || || | ||||||||| | ||| | | || |||||| Sbjct 477 GAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATACCTTCCTTGTCCTG 536 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 || || ||||| | | | || ||| || || |||| ||||| | || Sbjct 537 AATCTTGGCTTTGACATTATCAATGGTGTCGGAACTTTCAACCTCCAAAGTGATGGTCTT 596 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || || || ||||||||||||||||| Sbjct 597 CCCAGTGAGGGTCTTAACAAAGATTTGCAT 626 >seq208788 Length=2051 Score = 82.4 bits (90), Expect = 7e-11 Identities = 80/102 (78%), Gaps = 1/102 (1%) Strand=Plus/Minus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 ||||||||||| || || ||||| || ||||| || ||||| || || |||| ||| Sbjct 767 ACCAAATGTAGGGTCGATTCCTTTTGAATGTTATAGTCAGCAAGAGTACGGCCGTCCTCA 708 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGG 39176 ||||| || |||||||| || || | ||||||||| |||||| Sbjct 707 AGCTGCTTTCCCGCAAAGATTAGCCTCTGCTGGTCTGGTGGG 666 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427472374670825