Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asclepias_20syriaca_20[genbank_20GCA_5F002018285.1_202017-03-03] 221,855 sequences; 236,770,010 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq126512 104 5e-17 seq43197 104 5e-17 seq19840 104 5e-17 seq99865 98.7 2e-15 seq31975 98.7 2e-15 seq7008 98.7 2e-15 seq212820 93.3 9e-14 seq33326 93.3 9e-14 seq114820 91.5 3e-13 seq104294 89.7 1e-12 seq34486 89.7 1e-12 seq15737 89.7 1e-12 seq11435 89.7 1e-12 seq84027 86.0 1e-11 seq5813 84.2 5e-11 >seq126512 Length=590 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 133 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 74 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 73 CCCACGGTGGGC 62 >seq43197 Length=5024 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 4836 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 4895 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 4896 CCCACGGTGGGC 4907 >seq19840 Length=1303 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || ||||||| || |||||||||||||||||| Sbjct 127 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTTTTAACCTTGTGGTCGTGGGTTCGAGC 68 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 67 CCCACGGTGGGC 56 Score = 95.1 bits (104), Expect = 3e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||| ||||||||||| Sbjct 529 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCATGGGTTCGAGC 470 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 469 CCCACGGTGGGC 458 Score = 95.1 bits (104), Expect = 3e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| | |||||||||||||||||| Sbjct 771 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACTTTGTGGTCGTGGGTTCGAGC 712 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 711 CCCACGGTGGGC 700 >seq99865 Length=509 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 288 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 347 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 348 CCCACGGTGGGC 359 >seq31975 Length=2963 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 1812 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1871 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1872 CCCACGGTGGGC 1883 Score = 98.7 bits (108), Expect = 2e-15 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| || ||||||| || ||||||| || |||||||||||||||||| Sbjct 2417 GCCCGTCTAGCTCAGTTGGAAGAGCGCAAGGCTTTTAACCTTGTGGTCGTGGGTTCGAGC 2476 Query 165770 CCCACGATGGGCAT 165783 |||||| || |||| Sbjct 2477 CCCACGGTGCGCAT 2490 Score = 95.1 bits (104), Expect = 3e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||| | |||||||||| || || |||| || |||||||||||||||||| Sbjct 2015 GCCCGTCTAGCTCATTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 2074 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 2075 CCCACGGTGGGC 2086 >seq7008 Length=1593 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 853 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 912 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 913 CCCACGGTGGGC 924 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 || ||||||||||||| |||||||||| || || |||| || ||||||||||||||||| Sbjct 695 GCTCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGT 754 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 755 CCCACGGTGGGC 766 Score = 84.2 bits (92), Expect = 5e-11 Identities = 60/69 (87%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 165713 CGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCC 165772 ||||||||||||| |||||||||| || || ||||||| ||||| ||| |||| |||||| Sbjct 403 CGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAATCTTGTGGTTGTGAGTTCAAGCCCC 462 Query 165773 ACGATGGGC 165781 ||| ||||| Sbjct 463 ACGGTGGGC 471 >seq212820 Length=689 Score = 93.3 bits (102), Expect = 9e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| ||||||||| || || |||| || |||||||||||||||||| Sbjct 353 GCCCGTCTAGCTCAGTTAGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 412 Query 165770 CCCACGATGGGCAT 165783 |||||| ||| ||| Sbjct 413 CCCACGGTGGACAT 426 Score = 84.2 bits (92), Expect = 5e-11 Identities = 60/69 (87%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 165715 TCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCCAC 165774 ||||||||||| |||||||||| || || |||| || |||||||||| |||||||||| | Sbjct 545 TCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGATTCGAGCCCCGC 604 Query 165775 GATGGGCAT 165783 | ||||||| Sbjct 605 GGTGGGCAT 613 >seq33326 Length=1372 Score = 93.3 bits (102), Expect = 9e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| ||||||||| || || |||| || |||||| ||||||||||| Sbjct 615 GCCCGTCTAGCTCAGTTAGTAGAGCGCAAGGCTCTTAACCTTGTGGTCATGGGTTCGAGC 674 Query 165770 CCCACGATGGGCAT 165783 |||||| ||||||| Sbjct 675 CCCACGGTGGGCAT 688 Score = 91.5 bits (100), Expect = 3e-13 Identities = 62/70 (89%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| | || |||| || ||||||||||||||||| Sbjct 27 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAAGCTCTTAACCTTGTGGTCGTGGGTTCGAGT 86 Query 165770 CCCACGATGG 165779 |||||||||| Sbjct 87 CCCACGATGG 96 Score = 86.0 bits (94), Expect = 1e-11 Identities = 61/70 (87%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| | || |||| || ||||| ||||||||||| Sbjct 446 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAAGCTCTTAACCTTGTGGTTGTGGGTTCGAGT 505 Query 165770 CCCACGATGG 165779 |||||||||| Sbjct 506 CCCACGATGG 515 >seq114820 Length=573 Score = 91.5 bits (100), Expect = 3e-13 Identities = 62/70 (89%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| | || |||| || ||||||||||||||||| Sbjct 9 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAAGCTCTTAACCTTGTGGTCGTGGGTTCGAGT 68 Query 165770 CCCACGATGG 165779 |||||||||| Sbjct 69 CCCACGATGG 78 Score = 86.0 bits (94), Expect = 1e-11 Identities = 61/70 (87%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| | || |||| || ||||| ||||||||||| Sbjct 430 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAAGCTCTTAACCTTGTGGTTGTGGGTTCGAGT 489 Query 165770 CCCACGATGG 165779 |||||||||| Sbjct 490 CCCACGATGG 499 Score = 84.2 bits (92), Expect = 5e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||| ||||||||||| Sbjct 204 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCATGGGTTCGAGC 263 Query 165770 CCCA 165773 |||| Sbjct 264 CCCA 267 >seq104294 Length=583 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || ||||||||| |||||||| Sbjct 216 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGAGTTCGAGC 275 Query 165770 CCCACGATGGGC 165781 |||| | ||||| Sbjct 276 CCCATGGTGGGC 287 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 || ||||||||||||| |||||||||| || || |||| || ||||||||||||||||| Sbjct 44 GCTCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGA 103 Query 165770 CCCACGATGGGC 165781 || ||| ||||| Sbjct 104 CCTACGGTGGGC 115 >seq34486 Length=7597 Score = 89.7 bits (98), Expect = 1e-12 Identities = 330/508 (65%), Gaps = 23/508 (5%) Strand=Plus/Plus Query 229750 TTCTCTGCGTTCCCAATCCAATATCCCGATATGTGGGATATGTACAAGAAGGCGGTGGCA 229809 |||| | ||||||||||||||| || || || ||||| |||||||||||||| | ||| Sbjct 3490 TTCTGTATGTTCCCAATCCAATACCCTGAGATTTGGGAGATGTACAAGAAGGCTGAGGCT 3549 Query 229810 ACTTTCTGGACCACTGAGGAAGTTCCTCTGAACGCAGACGTCGTCGACTGGCGTGAGAAA 229869 | |||||||| | |||||||| ||| | ||| || | | ||| || ||| Sbjct 3550 TCCTTCTGGACTGCCGAGGAAGTCGATCTCTCTGTAGATGTTTCCCAGTGG---GAAAAA 3606 Query 229870 CTCAATGACGACGAACGTCATTTCATCAAACACATCCTAGGTTTTTTCGCAGGCTCCGAT 229929 || | ||| ||||| || || || | ||| | || | || || || | || ||| Sbjct 3607 CTTACCCCCGATGAACGACACTTTATTACTCACGTTCTTGCCTTCTTTGCCGCTTCAGAT 3666 Query 229930 GGTATTGTGATGGAAAATCT-GCAGACCAACTTTAGTG-TGGAAGTAACGGTTCCAGAGG 229987 || ||||| |||| ||||| || | | ||| || ||| || |||| | |||| Sbjct 3667 GGCATTGTTCTGGAGAATCTCGCCGGTC--GTTTCATGAAGGAGGTCCAGGTTTCCGAGG 3724 Query 229988 CACGGCAATTTTATGCTTACCAAACATTCAACGAATCTATCCATTCTGAACAATATGCTC 230047 | || || |||| || |||| | || ||| ||| || || || ||| || Sbjct 3725 CCCGTGCTTTCTATGGTTTTCAAATAGCCATCGAGAATATTCACTCCGAGATGTATAGTC 3784 Query 230048 TGCTTATCGACGCG---CTTA---TTTCCGACGAGCAAGAACGGAACGAGCTTTTTGATG 230101 | || | || || ||| |||| ||||| ||| || | ||| ||| | | Sbjct 3785 TCCTGTTGGAGACGTACATTAAGGATTCCAACGAG-AAGCACAG-----GCTCTTTCACG 3838 Query 230102 CCATTGAAAACATCCCGGCGGTTCATAACAAGGCAAAGTGGGCTCAGAAATGGCTAGAAC 230161 | || || | |||||| || | || || || |||||||| | ||||| |||| Sbjct 3839 CAATCGAGACCATCCCTTGCGTGGAAAAGAAAGCCAAGTGGGCCCTCCAATGGATAGA-- 3896 Query 230162 CTGGT--AAATCGTTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTT 230219 | | | |||| || ||||||||| | || || | | || ||||| || || | || Sbjct 3897 CGGCTCAGAATCCTTCGCCGAGCGTTTGGTTGCTTTCGCTTGCGTTGAGGGAATATTTTT 3956 Query 230220 TTCCGGGAGTTTCTGCGCCATCTTTTGG 230247 ||||| || || ||| | || |||||| Sbjct 3957 CTCCGGAAGCTTTTGCTCAATTTTTTGG 3984 >seq15737 Length=1188 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || ||||||||||||| |||| Sbjct 652 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTTGAGC 711 Query 165770 CCCACGATGGGC 165781 |||| | ||||| Sbjct 712 CCCATGGTGGGC 723 >seq11435 Length=2101 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 || ||||||||||||| |||||||||| || || |||| || ||||||||||||||||| Sbjct 489 GCTCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGA 548 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 549 CCCACGGTGGGC 560 >seq84027 Length=329 Score = 86.0 bits (94), Expect = 1e-11 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 165714 GTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCCA 165773 |||||||||||| |||||||||| || || |||| || ||||||||||||| |||||||| Sbjct 159 GTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTTGAGCCCCA 218 Query 165774 CGATGGG 165780 || |||| Sbjct 219 CGGTGGG 225 >seq5813 Length=1667 Score = 84.2 bits (92), Expect = 5e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 || ||||||||||||| |||| || | ||||| |||| || || |||||||||||||| Sbjct 738 GCTCGTCTAGCTCAGTTGGTAAAGTGTAAGACTCTTAACCTTGTAGTCGTGGGTTCGAGT 679 Query 165770 CCCACGATGGGCAT 165783 |||||||||||||| Sbjct 678 CCCACGATGGGCAT 665 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1054817117098650