Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asclepias_20syriaca_20[genbank_20GCA_5F002018285.1_202017-03-03] 221,855 sequences; 236,770,010 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq34486 181 1e-40 >seq34486 Length=7597 Score = 181 bits (200), Expect = 1e-40 Identities = 403/601 (67%), Gaps = 8/601 (1%) Strand=Plus/Minus Query 24132 AAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTG 24191 || || || || || || || ||||||||||| || ||| || ||||| || || || Sbjct 4073 AAGCAGGCAAAGTCACAATGAAGACCCTCGTCCCTCGAAATCAACTCGTTCGAGAAGGTT 4014 Query 24192 AGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAA 24250 | ||||||| || ||||||||||| | |||||| || || ||||| | | || || || Sbjct 4013 AAACCGGGCAATAAACCACGCTTTTTTAACCAAAAAATTGA-GCAAAAGCTTCCGGAGAA 3955 Query 24251 GAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAAC---CGGCGCTGTC 24307 || ||||| || || || || |||| | | || | | | | || ||| Sbjct 3954 AAATATTCCCTCAACGCAAGCGAAAGCAACCAAACGCTCGGCGAAGGATTCTGAGCCGTC 3895 Query 24308 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGC 24367 |||||| | | ||||| | ||| ||||||| || ||||| || ||||| || || Sbjct 3894 ---TATCCATTGGAGGGCCCACTTGGCTTTCTTTTCCACGCAAGGGATGGTCTCGATTGC 3838 Query 24368 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATA 24427 | |||||| || || || || ||| |||| || || || | || |||||||| Sbjct 3837 GTGAAAGAGCCTGTGCTTCTCGTTGGAATCCTTAATGTACGTCTCCAACAGGAGACTATA 3778 Query 24428 CATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGT 24487 ||| || || ||||| || || ||||| |||||||| || |||||| | ||||||| Sbjct 3777 CATCTCGGAGTGAATATTCTCGATGGCTATTTGAAAACCATAGAAAGCACGGGCCTCGGA 3718 Query 24488 AATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGC 24547 || ||| || || | || || | || | ||| || || || || || || Sbjct 3717 AACCTGGACCTCCTTCATGAAACGACCGGCGAGATTCTCCAGAACAATGCCATCTGAAGC 3658 Query 24548 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCA 24607 ||||| || || | || || | ||||| | | ||| || || || ||||| | ||| Sbjct 3657 GGCAAAGAAGGCAAGAACGTGAGTAATAAAGTGTCGTTCATCGGGGGTAAGTTTTTCCCA 3598 Query 24608 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 24667 | | |||| ||| | ||| ||||| || | ||||| || || ||||| ||||| Sbjct 3597 CTGGGAAACATCTACAGAGAGATCGACTTCCTCGGCAGTCCAGAAGGAAGCCTCAGCCTT 3538 Query 24668 TTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGATT 24727 || ||||| | ||| || ||| | ||||| ||||| || ||| ||||||| || || Sbjct 3537 CTTGTACATCTCCCAAATCTCAGGGTATTGGATTGGGAACATACAGAATCTATCAGGGTT 3478 Query 24728 T 24728 | Sbjct 3477 T 3477 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592075098680400