Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asclepias_20syriaca_20[genbank_20GCA_5F002018285.1_202017-03-03] 221,855 sequences; 236,770,010 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq53181 93.3 4e-14 seq4370 86.0 5e-12 >seq53181 Length=15488 Score = 93.3 bits (102), Expect = 4e-14 Identities = 74/89 (83%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 29076 GATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGAT 29135 ||||| || ||||||||||| || || || ||| ||||||| || ||| |||||||| Sbjct 6317 GATCAGCAGAGACTTATCTTCGCCGGTAAGCAATTGGAAGACGGCAGAACGTTGGCCGAT 6258 Query 29136 TACAATATTCAGAAGGAATCTACTCTTCA 29164 ||||||||||||||||| ||||| ||||| Sbjct 6257 TACAATATTCAGAAGGAGTCTACCCTTCA 6229 >seq4370 Length=4242 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||||||| | ||||| | || || ||||||||||| ||| || | | Sbjct 3446 ATGCAAATATTCGTAAAAACCCTCACCGGAAAAACCATTACTCTCGAGGTCGAGAGCTCG 3387 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || ||||| ||| || ||||| |||||| | || |||||| Sbjct 3386 GATACCATCGATAATGTTAAGGCAAAGATCCAAGATAAGGAAGGTATTCCTCCAGATCAG 3327 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || || | ||||| || || |||||||| |||||| | || | || |||||||| Sbjct 3326 CAGAGGTTGATCTTCGCTGGTAAACAACTTGAAGATGGCCGCACCCTCGCAGATTACAAC 3267 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTG 29171 || |||||||| || || || ||| ||||| Sbjct 3266 ATCCAGAAGGAGTCCACCCTGCACTTGGTG 3237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427177840360025