Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asclepias_20syriaca_20[genbank_20GCA_5F002018285.1_202017-03-03] 221,855 sequences; 236,770,010 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq53181 93.3 3e-14 >seq53181 Length=15488 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 25111 TCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTG 25170 ||||| ||||||| ||||| ||||| | ||| || ||||| |||||||| |||| Sbjct 5671 TCAAGGCAAAAATTCAAGATAAGGAAGGGATTCCCCCGGACCAACAGAGACTTATTTTTG 5612 Query 25171 CGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTA 25230 | || ||||||||||| || ||| |||||||||| || || |||||||| || | Sbjct 5611 CTGGAAAACAATTGGAGGACGGACGAACATTGGCCGATTATAACATACAAAAGGAGTCCA 5552 Query 25231 CTCTTCACATGGTG 25244 | |||||| ||||| Sbjct 5551 CCCTTCACCTGGTG 5538 Score = 93.3 bits (102), Expect = 3e-14 Identities = 74/89 (83%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 25149 GATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGAT 25208 ||||| || ||||||||||| || || || ||||||||||| || ||| |||||||| Sbjct 6317 GATCAGCAGAGACTTATCTTCGCCGGTAAGCAATTGGAAGACGGCAGAACGTTGGCCGAT 6258 Query 25209 TACAATATTCAAAAGGAATCTACTCTTCA 25237 ||||||||||| ||||| ||||| ||||| Sbjct 6257 TACAATATTCAGAAGGAGTCTACCCTTCA 6229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409686063862970