Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asclepias_20syriaca_20[genbank_20GCA_5F002018285.1_202017-03-03] 221,855 sequences; 236,770,010 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq53181 145 1e-29 seq23310 113 7e-20 seq4542 105 1e-17 seq31911 98.7 1e-15 seq4370 96.9 5e-15 >seq53181 Length=15488 Score = 145 bits (160), Expect = 1e-29 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||||||| | || || || ||||| || || || ||| | ||| ||||| | Sbjct 5747 ATGCAAATATTTGTTAAAACTCTCACAGGTAAGACGATTACTCTTGAGGTTGAAAGTTCT 5688 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| || ||| | || |||||||||||||| ||||| || || || || ||| Sbjct 5687 GATACCATCGATAACGTCAAGGCAAAAATTCAAGATAAGGAAGGGATTCCCCCGGACCAA 5628 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || || ||||||||||| ||||||||||| ||||| | |||||||| | |||||||| Sbjct 5627 CAGAGACTTATTTTTGCTGGAAAACAATTGGAGGACGGACGAACATTGGCCGATTATAAC 5568 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||| || || || | || |||| | ||| | |||||||||| Sbjct 5567 ATACAAAAGGAGTCCACCCTTCACCTGGTGCTGCGTCTCAGAGGTGGTAT 5518 >seq23310 Length=1212 Score = 113 bits (124), Expect = 7e-20 Identities = 153/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| | ||||| |||| || || || || ||| | ||| | ||| Sbjct 1163 AATGCAAATCTTTGTTAAGACCTTAACCGGGAAGACCATCACTCTTGAGGTGGAAAGTTC 1104 Query 124598 TGATACAATTTCTAATTTAAA-ACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 || || ||| ||| | || ||| || |||||||| || |||||||| ||||| |||| Sbjct 1103 AGACACCATTGACAATGTCAAGACA-AAGATTCAAGACAAGGAAGGTATCCCACCAGATC 1045 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | || ||| | ||||| || || |||||| | ||||| |||| || | | || || | Sbjct 1044 AGCAGAGGTTGATTTTCGCTGGTAAACAACTGGAGGACGGTCGTACCCTTGCTGACTACA 985 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGT 124747 |||| || |||||||||||| | ||||| || Sbjct 984 ATATCCAGAAAGAATCAACTCTTCATTTAGT 954 >seq4542 Length=2509 Score = 105 bits (116), Expect = 1e-17 Identities = 97/123 (79%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 124628 TCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATT 124687 ||| || ||||||||||| || |||||||| || || ||||||||||| || || ||||| Sbjct 2256 TCAGGACAAAGAAGGTATTCCTCCTGATCAGCAGAGACTTATTTTTGCTGGTAAGCAATT 2197 Query 124688 AGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGT 124747 || ||| | || || |||| || ||||| || || ||||||||||| | || ||||| Sbjct 2196 GGAAGATGGCCGTACTTTAGCTGACTATAACATCCAGAAAGAATCAACCCTTCACTTGGT 2137 Query 124748 TTT 124750 ||| Sbjct 2136 TTT 2134 >seq31911 Length=2244 Score = 98.7 bits (108), Expect = 1e-15 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAA 124596 |||||| |||||| | || || || || || ||||| ||||| ||||| | || ||| Sbjct 1050 AATGCAGATATTTGTGAAAACTCTCACCGGAAAAACCATAACACTAGAGGTGGAGAGCTC 991 Query 124597 ATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 ||||| ||| ||| |||| || || || ||||| |||||||| || | || | Sbjct 990 G-GATACCATTGACAATGTAAAGGCCAAGATACAGGATAAGGAAGGTATTCCCTCAGACC 932 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | || ||| | || ||||| ||||| || | || ||| | || || | | ||| || | Sbjct 931 AGCAGAGGTTGATCTTTGCTGGAAAGCAGCTTGAAGATGGACGGACCCTTGCAGACTACA 872 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGT 124747 | ||||| ||||||||||| | |||||||| Sbjct 871 ACATTCAGAAAGAATCAACCCTTCATTTGGT 841 >seq4370 Length=4242 Score = 96.9 bits (106), Expect = 5e-15 Identities = 151/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||||||||| |||| || || || || ||||| || ||| | ||| | || ||| Sbjct 3446 ATGCAAATATTCGTAAAAACCCTCACCGGAAAAACCATTACTCTCGAGGTCGAGAGC-TC 3388 Query 124598 TGATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 ||||| || |||| |||| || || || |||||||| |||||||| || || |||| Sbjct 3387 GGATACCATCGATAATGTTAAGGCA-AAGATCCAAGATAAGGAAGGTATTCCTCCAGATC 3329 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | || ||| | || || || || |||||| | || ||| | || || | | |||||| | Sbjct 3328 AGCAGAGGTTGATCTTCGCTGGTAAACAACTTGAAGATGGCCGCACCCTCGCAGATTACA 3269 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGT 124747 | || || || || || || |||| ||||| Sbjct 3268 ACATCCAGAAGGAGTCCACCCTGCACTTGGT 3238 Score = 87.8 bits (96), Expect = 3e-12 Identities = 165/240 (69%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAA 124596 ||||||||||||| | ||||| || || ||||| ||||| ||| | ||| | || ||| Sbjct 2763 AATGCAAATATTTGTCAAGACTCTCACGGGCAAGACTATTACTTTGGAGGTGGAGAGC-T 2705 Query 124597 ATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 || || ||| || | || || || || ||||| ||||| || || || || | Sbjct 2704 CGGACACGATTGACAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCAGACC 2645 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | || ||| | |||||||| || || ||| | || || |||| || | | ||||| | Sbjct 2644 AGCAGAGGTTGATTTTTGCCGGTAAGCAACTGGAAGACGGTCGTACCCTGGCCGATTACA 2585 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 | || || || || || || | || ||||| | ||| | || |||||||| ||| || Sbjct 2584 ACATCCAGAAGGAGTCCACACTTCACTTGGTGCTCCGTCTCCGTGGTGGTATGCAAATTT 2525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 753360978864000