Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asclepias_20syriaca_20[genbank_20GCA_5F002018285.1_202017-03-03] 221,855 sequences; 236,770,010 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq23310 91.5 2e-13 seq53181 86.0 7e-12 >seq23310 Length=1212 Score = 91.5 bits (100), Expect = 2e-13 Identities = 152/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| ||| ||||| | || || || || |||||||| ||||| || || || || Sbjct 948 CGCAGCACTAAATGAAGAGTTGATTCTTTCTGGATATTGTAGTCAGCAAGGGTACGACCG 1007 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || || || ||||||||||| || | | |||||| || | || | | |||||| Sbjct 1008 TCCTCCAGTTGTTTACCAGCGAAAATCAACCTCTGCTGATCTGGTGGGATACCTTCCTTG 1067 Query 43089 TCCATGATTTTTTGT-TTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 | | ||| | ||||| |||| | | | ||||| |||||| || | ||||| Sbjct 1068 T-CTTGAATCTTTGTCTTGACATTGTCAATGGTGTCTGAACTTTCCACCTCAAGAGTGAT 1126 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 ||| || || |||| ||||| ||||||||||||||| Sbjct 1127 GGTCTTCCCGGTTAAGGTCTTAACAAAGATTTGCATT 1163 >seq53181 Length=15488 Score = 86.0 bits (94), Expect = 7e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || ||||| | ||| | || | || | |||| |||||| ||||| ||||||||||| Sbjct 5293 CCACCTCTAAGACGGAGGACAAGGTGGAGTGTGGACTCCTTCTGAATGTTGTAATCAGCA 5352 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || ||| | || ||||| ||||| ||||| || ||||| | |||||| || | || Sbjct 5353 AGGGTGCGCCCATCCTCTAGTTGCTTCCCAGCAAAAATGAGCCTCTGCTGATCCGGGGGA 5412 Query 43077 ACGCTCTCCTTGTCC 43091 | | |||||||||| Sbjct 5413 ATCCCCTCCTTGTCC 5427 Score = 82.4 bits (90), Expect = 9e-11 Identities = 138/196 (70%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| |||||||||||||| |||| || | |||| || | |||||||| ||||| Sbjct 6240 CTCCTTCTGAATATTGTAATCGGCCAACGTTCTGCCGTCTTCCAATTGCTTACCGGCGAA 6299 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || |||| |||||| || | || | | |||||||||| ||| | || | | | ||| Sbjct 6300 GATAAGTCTCTGCTGATCAGGAGGAATTCCCTCCTTGTCC-TGAATCTTCGCCTTAACGT 6358 Query 43112 CG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 43167 | | | || || ||| || || |||| ||||| || || || ||||| || | Sbjct 6359 TGTCGATGGTATCTGAACTC---TCGACCTCGAGAGTGATCGTCTTACCGGTTAGGGTTT 6415 Query 43168 TTACAAAGATTTGCAT 43183 | || ||||| ||||| Sbjct 6416 TAACGAAGATCTGCAT 6431 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570231842579400