Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asclepias_20syriaca_20[genbank_20GCA_5F002018285.1_202017-03-03] 221,855 sequences; 236,770,010 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq4542 104 3e-17 seq23310 95.1 2e-14 seq53706 93.3 6e-14 seq31911 84.2 3e-11 >seq4542 Length=2509 Score = 104 bits (114), Expect = 3e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 ||||| |||||||| || || ||||| || | || |||||||| || ||||| || Sbjct 2116 GTTCCTCCTCTAAGCCTCAAAACCAAGTGAAGGGTTGATTCTTTCTGGATGTTATAGTCA 2175 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | | ||| | || ||| || ||||| || ||||||||||| | ||| |||||||| ||| Sbjct 2176 GCTAAAGTACGGCCATCTTCCAATTGCTTACCAGCAAAAATAAGTCTCTGCTGATCAGGA 2235 Query 146168 GGAATTCCTTCTTTATCTTG 146187 ||||| |||||||| || || Sbjct 2236 GGAATACCTTCTTTGTCCTG 2255 >seq23310 Length=1212 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| || |||| | |||||||| | ||| ||||| || ||||| || || | | Sbjct 708 CCACCCCTCAGTCGCAGCACCAAATGAAGAGTCGATTCCTTCTGGATATTGTAGTCAGCA 767 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || || | ||| || | || ||||||||||||||||| | ||||||||| |||||| Sbjct 768 AGGGTCCTCCCATCCTCAAGCTGCTTTCCAGCAAAAATCAAGCGTTGCTGATCTGGAGGA 827 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| || || || Sbjct 828 ATGCCTTCCTTGTCCTG 844 >seq53706 Length=7557 Score = 93.3 bits (102), Expect = 6e-14 Identities = 69/81 (85%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 ||||||||||| | ||| |||| || ||| ||||| || ||||||||||||||||| || Sbjct 451 ATATTATAATCAGCAAGGGTTCGGCCATCTTCTAACTGCTTTCCAGCAAAAATCAACCTC 392 Query 146156 TGCTGATCCGGAGGAATTCCT 146176 ||||| ||||| ||||||||| Sbjct 391 TGCTGGTCCGGTGGAATTCCT 371 >seq31911 Length=2244 Score = 84.2 bits (92), Expect = 3e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||| || || | ||| | |||||||| | || |||||||| || || || |||| Sbjct 1049 TTCCTCCCCTCAATCTAAGGACCAAATGAAGGGTTGATTCTTTCTGAATGTTGTAGTCTG 1108 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 ||| || | | ||| || | || ||||||||||| |||||||| ||||| || || | Sbjct 1109 CAAGGGTCCGTCCATCTTCAAGCTGCTTTCCAGCAAAGATCAATCTCTGCTGGTCTGGGG 1168 Query 146169 GAATTCCTTCTTTATCTTG 146187 |||| ||||| ||||| || Sbjct 1169 GAATACCTTCCTTATCCTG 1187 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741464461881600