Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asclepias_20syriaca_20[genbank_20GCA_5F002018285.1_202017-03-03] 221,855 sequences; 236,770,010 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq42083 122 6e-23 seq31910 100 2e-16 seq53181 96.9 2e-15 seq31911 95.1 8e-15 seq4370 89.7 3e-13 seq24190 82.4 5e-11 >seq42083 Length=68989 Score = 122 bits (134), Expect = 6e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||||| | || |||||| || || || || ||||| ||||| || || | Sbjct 15134 CCACCGCGCAAGCGCAACACCAGATGCAAGGTTGACTCCTTCTGGATGTTATAATCAGCT 15193 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGG 34281 || | | |||| || | ||||||||| ||||| |||||||||||||| || | |||| Sbjct 15194 AGGGTCCTGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGATCTGGCGGG 15253 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || |||||| || |||||| ||| | || | | || | ||||| || || || Sbjct 15254 -ATGCCCTCCTTATCCTGTATCTTAGCCTTGACATTGTCAATGGTATCGGAGGACTCAAC 15312 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 |||| || ||||| || ||||| || |||||||| |||||||||||| Sbjct 15313 CTCCAAAGTAATGGTCTTACCGGTTAGGGTTTTCACGAAGATCTGCATC 15361 >seq31910 Length=2189 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||| ||| | || ||| ||||| |||||||| || | || |||| | || Sbjct 1285 AGCACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAATCAGCGAGGGTACGGCCATCT 1344 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | |||||| || || || || | || ||||||||| ||| | | |||||||| Sbjct 1345 TCAAGCTGCTTACCAGCAAAGATCAACCTCTGCTGGTCTGGGGGAATCCCTTCCTTGTCT 1404 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | || | |||||| ||| | ||||| || | || || ||| Sbjct 1405 TGGATCTTCGCCTTAACATTGTCTATCGTATCAGAGCTCTCGACCTCGAGAGTAATTGTT 1464 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || |||||||| ||||||||||| ||||||||| Sbjct 1465 TTTCCGGTGAGGGTTTTCACAAAAATCTGCATC 1497 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||| ||| | || ||| ||||| ||||||||||| | ||| || | || Sbjct 601 AGCACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCTGCCAGGGTGCGACCATCT 660 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| |||||||| || || || | || |||||||||| ||| | || ||||| || Sbjct 661 TCCAGTTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCGGGGGGAATGCCTTCCTTATCC 720 Query 34298 GCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 || ||| ||||| | || | || | ||| | || || || | || ||||| Sbjct 721 TGGAT-TTTAGCTTTCACATTATCAATGGTATCCGAGCTCTCCACCTCTAATGTTATGGT 779 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||| || ||||||||||||||||| |||||||| Sbjct 780 TTTTCCTGTGAGAGTTTTCACAAATATCTGCAT 812 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || | || || || |||| ||| | ||| ||| ||||| ||||||||||| | Sbjct 813 TCCTCCCCTCAATCTAAGGACCAAGTGAAGAGTTGATTCCTTCTGAATGTTGTAGTCTGC 872 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || || | || || | |||||| || || || || | || ||||||||| ||| Sbjct 873 AAGGGTCCGTCCATCTTCAAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGGGG 932 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||||| || ||||| ||| | || | | || | ||| | || || Sbjct 933 AATGCCTTCCTTATCCTGAATCTTGGCCTTCACATTGTCAATTGTATCCGAGCTCTCCAC 992 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | || | |||||| || ||||||||||||||||| |||||||| Sbjct 993 CTCTAGTGTTACGGTTTTCCCAGTGAGAGTTTTCACAAATATCTGCAT 1040 >seq53181 Length=15488 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| ||||||| || || || | ||| || ||||| ||||||||||||| | Sbjct 5977 CCACCGCGGAGCCTCAAAACAAGATGAAGGGTAGACTCCTTCTGAATGTTGTAGTCGGCC 6036 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | | | |||| ||||||||||| || ||||| || | |||||||| || || Sbjct 6037 AAAGTTCTGCCGTCTTCCAACTGCTTACCGGCGAAGATCAAGCGCTGCTGATCAGGAGGA 6096 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||| || ||||| ||| | | | | || | ||| | |||||| Sbjct 6097 ATTCCTTCCTTATCCTGAATCTTAGCCTTAACGTTGTCGATAGTATCAGAACTTTCGACT 6156 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 |||| ||||| || || |||||||| ||||| ||||| || |||||| Sbjct 6157 TCCAAGGTGATCGTCTTACCGGTGAGGGTTTTGACAAATATTTGCATC 6204 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| ||||||| || || ||||| ||| || ||||| || || || |||| | Sbjct 5749 CCACCGCGAAGCCTCAAGACGAGATGTAAGGTAGACTCCTTCTGGATATTATAATCGGCC 5808 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGG 34281 | | |||| ||||||||||| || || || || || |||||||| || | ||| Sbjct 5809 AAGGTTCTCCCGTCTTCCAACTGCTTCCCGGCAAAGATCAGGCGCTGCTGATCAGGAGGG 5868 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || |||||||| ||||| ||| | | | | || | ||| | ||||| Sbjct 5869 ATCCCT-TCCTTGTCCTGAATCTTAGCCTTAACGTTGTCGATTGTATCAGAACTCTCGAC 5927 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 |||| || || || || || ||||||||||| ||||| || |||||| Sbjct 5928 TTCCAAGGTAATAGTCTTACCTGTGAGAGTTTTGACAAATATTTGCATC 5976 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| ||||||| || || || | ||| || ||||| || ||||| |||| | Sbjct 6205 CCACCGCGGAGCCTCAAAACAAGATGAAGGGTAGACTCCTTCTGAATATTGTAATCGGCC 6264 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | | | | |||| ||||| ||||| || ||||| || || | |||||| || || Sbjct 6265 AACGTTCTGCCGTCTTCCAATTGCTTACCGGCGAAGATAAGTCTCTGCTGATCAGGAGGA 6324 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| ||||| ||| | | | | || | ||| | ||||| Sbjct 6325 ATTCCCTCCTTGTCCTGAATCTTCGCCTTAACGTTGTCGATGGTATCTGAACTCTCGACC 6384 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||| || || ||||| || ||||| || ||||||||||| Sbjct 6385 TCGAGAGTGATCGTCTTACCGGTTAGGGTTTTAACGAAGATCTGCAT 6431 >seq31911 Length=2244 Score = 95.1 bits (104), Expect = 8e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||| ||| | || ||| ||||| ||||||||||| | ||| || | || Sbjct 610 AGCACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCTGCCAGGGTGCGACCATCT 669 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| |||||||| || || || | || ||||||||| ||| | | |||||||| Sbjct 670 TCCAGTTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCTGGGGGAATACCTTCCTTGTCC 729 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 |||||| ||| | || | | || | ||| | || || || | || |||||| Sbjct 730 TGTATCTTGGCCTTCACATTGTCAATGGTATCCGAGCTCTCCACCTCTAATGTAATGGTT 789 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || || |||||||||||||| |||||||| Sbjct 790 TTCCCAGTTAGAGTTTTCACAAATATCTGCAT 821 Score = 95.1 bits (104), Expect = 8e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||||||||| ||||||||||| | || || | || || | |||||| || || || Sbjct 858 TTCTTTCTGAATGTTGTAGTCTGCAAGGGTCCGTCCATCTTCAAGCTGCTTTCCAGCAAA 917 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 || | || ||||||||| ||| | | ||||| || |||||| ||||| || Sbjct 918 GATCAACCTCTGCTGGTCTGAGGGAATACCTTCCTTATCCTGTATCTTGGCCTTTACATT 977 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | | || | ||| | || || || | || |||||||| ||||||||||||||||| Sbjct 978 GTCAATGGTATCCGAGCTCTCCACCTCTAGTGTTATGGTTTTTCCGGTGAGAGTTTTCAC 1037 Query 34378 AAAGATCTGCAT 34389 ||| |||||||| Sbjct 1038 AAATATCTGCAT 1049 Score = 91.5 bits (100), Expect = 9e-14 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || || || | || || ||||| | || ||| ||||| ||||||||||| | Sbjct 366 TCCACCACGGAGACGAAGGACAAGGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCAGC 425 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 ||| | | | || ||||| ||||| || || || || | || ||||||||| ||| Sbjct 426 CAGTGTCCTGCCATCCTCCAATTGCTTACCGGCAAATATCAACCTCTGCTGGTCAGGGGG 485 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | ||||||||| |||||| ||||| || | || | ||| | || || Sbjct 486 AATTCCCTCCTTGTCCTGTATCTTAGTCTTTACATTATCAATGGTATCCGAGCTCTCCAC 545 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| || ||||| || || ||||||||||| ||||| || ||||| Sbjct 546 CTCCAATGTTATGGTCTTCCCAGTGAGAGTTTTAACAAAAATTTGCAT 593 >seq4370 Length=4242 Score = 89.7 bits (98), Expect = 3e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || ||||| ||||||| ||| | || ||| ||||| ||||| || || | | Sbjct 2992 CCACCACGGAGCCTGAGCACCAAGTGCAGGGTGGATTCCTTCTGGATGTTATAATCTGCC 3051 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || || | |||||| || ||||| || | || ||||||||| || Sbjct 3052 AGGGTGCGGCCATCTTCAAGCTGCTTACCGGCGAAGATCAACCTCTGCTGGTCTGGTGGG 3111 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| || || ||| | || | || | ||||| ||| || Sbjct 3112 ATTCCCTCCTTGTCCTGGATTTTAGCCTTAACATTATCAATTGTATCGGAGCTTTCCACC 3171 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| || || || || |||||||| ||||| || ||||||||||| Sbjct 3172 TCCAAAGTAATTGTCTTTCCGGTGAGGGTTTTGACGAAGATCTGCAT 3218 >seq24190 Length=3131 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || |||||||| | || ||||| || | || || ||||| |||||||| || | Sbjct 1480 CCACCGCGCAGACGGAGAACCAGATGCAGGGTTGACTCCTTCTGGATGTTGTAATCCGCT 1421 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || | | | || || | |||||| || ||||| |||||||||||||| || || Sbjct 1420 AGGGTCCTGCCATCCTCGAGCTGCTTTCCGGCGAAGATGAGCCGCTGCTGATCTGGTGGA 1361 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | |||||||| || || ||| | || | | || | |||| ||||| || Sbjct 1360 ATTCCTTCCTTGTCTTGGATTTTAGCCTTGACATTGTCAATGGTGTCGGAGGATTCAACC 1301 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 |||| || || || || || || || ||||| || |||||||||||| Sbjct 1300 TCCAGAGTAATTGTCTTACCCGTTAGGGTTTTGACGAAGATCTGCATC 1253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322198459248800