Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asclepias_20syriaca_20[genbank_20GCA_5F002018285.1_202017-03-03] 221,855 sequences; 236,770,010 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq34486 168 6e-37 >seq34486 Length=7597 Score = 168 bits (186), Expect = 6e-37 Identities = 379/563 (67%), Gaps = 15/563 (3%) Strand=Plus/Minus Query 16235 CAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGA 16294 || ||||| |||||||| | || |||||||| || |||||||| || || || | | Sbjct 4070 CAGGCAAAGTCACAATGAAGACCCTCGTCCCTCGAAATCAACTCGTTCGAGAAGGTTAAA 4011 Query 16295 CCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAAT 16354 || |||| || || || ||||| | |||||| || | | ||| || || || ||| Sbjct 4010 CCGGGCAATAAACCACGCTTTTTTAACCAAAAAATTGAGCAAAAGCTTCCGGAGAAAAAT 3951 Query 16355 ATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAttttta-ctttc 16413 || || ||||| || || |||||||| ||||| || | | ||| | | | || Sbjct 3950 ATTCCCTCAACGCAAGCGAAAGCAACCAAACGCTCGGCGAAGG----ATTCTGAGCCGTC 3895 Query 16414 tatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATT 16473 |||||||| ||||| || ||||| | || || || ||| |||| ||||| | Sbjct 3894 TATCCATTGGAGGGCCCACTTGGCTTTCTTTTCCACGCAAGGGATGGTCTCGATTGCGTG 3835 Query 16474 AAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACAT 16533 ||| | | || || ||| ||| ||| || || || | || | ||||||||| Sbjct 3834 AAAGAGCCTGTGCTTCTCGTTGGAATCCTTAATGTACGTCTCCAACAGGAGACTATACAT 3775 Query 16534 TTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATA-AAAGCATCTAGCTTCGGATA 16592 || || ||||||||||| || ||||| ||||||||||| |||||| | || ||||| | Sbjct 3774 CTCGGAGTGAATATTCTCGATGGCTATTTGAAAACCATAGAAAGCA-CGGGCCTCGGAAA 3716 Query 16593 TTTG----TACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTA 16648 || | ||||| | ||| | | || | || || ||| || ||||| | Sbjct 3715 CCTGGACCTCCTTCA---TGAAA-CGACCGGCGAGATTCTCCAGAACAATGCCATCTGAA 3660 Query 16649 GCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGTTTTAAC 16708 || ||||| || ||||| | ||| ||||||| | | ||| | | ||||||| | Sbjct 3659 GCGGCAAAGAAGGCAAGAACGTGAGTAATAAAGTGTCGTTCATCGGGGGTAAGTTTTTCC 3600 Query 16709 CAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCC 16768 || | |||| |||| || | |||||| || || ||||||| || ||||| ||||| Sbjct 3599 CACTGGGAAACATCTACAGAGAGATCGACTTCCTCGGCAGTCCAGAAGGAAGCCTCAGCC 3540 Query 16769 TTTTTATACATTTTCCATATGTC 16791 || || ||||| | ||| || || Sbjct 3539 TTCTTGTACATCTCCCAAATCTC 3517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 461229367503000