Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asclepias_20syriaca_20[genbank_20GCA_5F002018285.1_202017-03-03] 221,855 sequences; 236,770,010 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq4370 138 9e-28 seq31910 109 4e-19 seq31911 107 2e-18 seq23310 96.9 3e-15 seq53181 95.1 1e-14 >seq4370 Length=4242 Score = 138 bits (152), Expect = 9e-28 Identities = 158/210 (75%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || ||| ||||||||| |||||||| ||| ||| ||| |||| ||| Sbjct 2554 ACCAAGTGAAGTGTGGACTCCTTCTGGATGTTGTAATCGGCCAGGGTACGACCGTCTTCC 2613 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 ||||| || ||||| || ||||||| ||| ||||| || || | || ||||| ||| Sbjct 2614 AGTTGCTTACCGGCAAAAATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTATCCTGG 2673 Query 45248 ATTTTTTGCTTAACCGCCGCCACGC-TGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306 || || ||| || | | || | ||||| | ||||||||||| ||||| ||||| Sbjct 2674 ATCTTGGCCTTCAC-GTTGTCAATCGTGTCCGAGCTCTCCACCTCCAAAGTAATAGTCTT 2732 Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||||| |||||||| ||||| |||||||| Sbjct 2733 GCCCGTGAGAGTCTTGACAAATATTTGCAT 2762 Score = 125 bits (138), Expect = 6e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||| || || ||| ||||||||| ||||||||||| ||| |||| | || ||| Sbjct 2326 ACCAAATGAAGAGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGACCATCTTCC 2385 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 ||||| |||||||| || ||||||| ||| ||||| || || | || ||||| ||| Sbjct 2386 AGTTGCTTTCCGGCAAAAATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTATCCTGG 2445 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| ||| || | | | |||| | ||||||||||| || || ||||| Sbjct 2446 ATTTTGGCCTTCACATTGTCAATGGTGTCTGAGCTCTCCACCTCCAAAGTGATAGTCTTA 2505 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || ||||||||||| |||||||| Sbjct 2506 CCGGTGAGGGTCTTCACAAAAATTTGCAT 2534 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||||||||| ||| |||||||| ||||| || || ||| ||| | || || Sbjct 3010 ACCAAGTGCAGGGTGGATTCCTTCTGGATGTTATAATCTGCCAGGGTGCGGCCATCTTCA 3069 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || |||||||| ||||||| ||| ||||| || || | |||||||||||| Sbjct 3070 AGCTGCTTACCGGCGAAGATCAACCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCCTGG 3129 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| |||||| | | | || | |||||||||| ||||| ||||| Sbjct 3130 ATTTTAGCCTTAACATTATCAATTGTATCGGAGCTTTCCACCTCCAAAGTAATTGTCTTT 3189 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || || || || || || ||||| |||||| Sbjct 3190 CCGGTGAGGGTTTTGACGAAGATCTGCATG 3219 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||||||||| ||| ||||||||| |||||||| || || ||| | || || Sbjct 3238 ACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAATCTGCGAGGGTGCGGCCATCTTCA 3297 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 |||||||| || ||||| ||||||| ||| || || ||||| | ||| ||||| || Sbjct 3298 AGTTGTTTACCAGCGAAGATCAACCTCTGCTGATCTGGAGGAATACCTTCCTTATCTTGG 3357 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || ||| |||||| | | | | ||| | ||| ||||| | ||||| || || Sbjct 3358 ATCTTTGCCTTAACATTATCGATGGTATCCGAGCTCTCGACCTCGAGAGTAATGGTTTTT 3417 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || || || || || |||||||| Sbjct 3418 CCGGTGAGGGTTTTTACGAATATTTGCAT 3446 >seq31910 Length=2189 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || || |||||||| | |||||||| || || |||||||||||||||||||| Sbjct 1042 CCTCCCCTCAATCTAAGAACCAAGTGAAGGGTTGATTCCTTCTGAATGTTGTAGTCTGCA 1101 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || || | || || || || ||||| || || ||||||| ||| ||||| || || Sbjct 1102 AGAGTCCGTCCATCTTCAAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGGGGA 1161 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||| ||||||||| ||| || ||| || | | | | ||| | ||||||| Sbjct 1162 ATACCTTCCTTGTCCTGAATCTTGGCCTTCACATTGTCAATGGTATCCGAGCTCTCCACC 1221 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 |||| || || ||||| || || || || ||||| || ||||||||| Sbjct 1222 TCCAATGTTATGGTCTTCCCGGTGAGGGTTTTCACGAAAATTTGCATG 1269 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || |||||||| ||||||||||| ||| |||| | || ||| Sbjct 604 ACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCTGCCAGGGTGCGACCATCTTCC 663 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 ||||| || || || || ||||||| ||| |||||||| || | || ||||| ||| Sbjct 664 AGTTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCGGGGGGAATGCCTTCCTTATCCTGG 723 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| || || | | | | ||| | ||||||||| | || || || || Sbjct 724 ATTTTAGCTTTCACATTATCAATGGTATCCGAGCTCTCCACCTCTAATGTTATGGTTTTT 783 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || ||||| |||||||| || ||||| Sbjct 784 CCTGTGAGAGTTTTCACAAATATCTGCAT 812 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || || |||||||| | |||||||| || || |||||||||||||||||||| Sbjct 814 CCTCCCCTCAATCTAAGGACCAAGTGAAGAGTTGATTCCTTCTGAATGTTGTAGTCTGCA 873 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || || | || || || || ||||| || || ||||||| ||| ||||| || || Sbjct 874 AGGGTCCGTCCATCTTCAAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGGGGA 933 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || ||||| ||| ||| || ||| || | | | ||| | ||||||| Sbjct 934 ATGCCTTCCTTATCCTGAATCTTGGCCTTCACATTGTCAATTGTATCCGAGCTCTCCACC 993 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | || | || || || || ||||| |||||||| || ||||| Sbjct 994 TCTAGTGTTACGGTTTTCCCAGTGAGAGTTTTCACAAATATCTGCAT 1040 >seq31911 Length=2244 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || |||||||| ||||||||||| ||| |||| | || ||| Sbjct 613 ACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCTGCCAGGGTGCGACCATCTTCC 672 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 ||||| || || || || ||||||| ||| ||||| || || | ||| ||||||||| Sbjct 673 AGTTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCTGGGGGAATACCTTCCTTGTCCTGT 732 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | ||| | ||||||||| | ||||| || || Sbjct 733 ATCTTGGCCTTCACATTGTCAATGGTATCCGAGCTCTCCACCTCTAATGTAATGGTTTTC 792 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || ||||| |||||||| || ||||| Sbjct 793 CCAGTTAGAGTTTTCACAAATATCTGCAT 821 Score = 104 bits (114), Expect = 2e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| |||||||| ||||||||||| |||| | | || |||| ||| Sbjct 390 GTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCAGCCAGTGTCCTGCCATCCTCCAATTG 449 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || ||||| |||||||||| ||| ||||| || || | |||||||||||| || || Sbjct 450 CTTACCGGCAAATATCAACCTCTGCTGGTCAGGGGGAATTCCCTCCTTGTCCTGTATCTT 509 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | | ||| | ||||||||||| || || ||||| || || Sbjct 510 AGTCTTTACATTATCAATGGTATCCGAGCTCTCCACCTCCAATGTTATGGTCTTCCCAGT 569 Query 45313 CAGAGTCTTCACAAAGATTTGCATG 45337 ||||| || ||||| ||||||||| Sbjct 570 GAGAGTTTTAACAAAAATTTGCATG 594 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || || |||||||| | ||||| || || || || ||||||||||||||||| Sbjct 1051 CCTCCCCTCAATCTAAGGACCAAATGAAGGGTTGATTCTTTCTGAATGTTGTAGTCTGCA 1110 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || || | || || || || ||||| || || ||||| | ||| ||||| || || Sbjct 1111 AGGGTCCGTCCATCTTCAAGCTGCTTTCCAGCAAAGATCAATCTCTGCTGGTCTGGGGGA 1170 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||| ||||| ||| || || |||||| | | | | ||| | ||||||| Sbjct 1171 ATACCTTCCTTATCCTGTATCTTGGCCTTAACATTGTCAATGGTATCCGAGCTCTCCACC 1230 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| || || ||||| || || || || ||||| || |||||||| Sbjct 1231 TCCAATGTTATGGTCTTCCCGGTGAGGGTTTTCACGAAAATTTGCAT 1277 >seq23310 Length=1212 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 || ||||| || |||||||| || ||| |||| ||||||||||| || ||||| Sbjct 972 TCTTTCTGGATATTGTAGTCAGCAAGGGTACGACCGTCCTCCAGTTGTTTACCAGCGAAA 1031 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 ||||||| ||| || || || || | ||| |||||||| ||| ||| ||| || Sbjct 1032 ATCAACCTCTGCTGATCTGGTGGGATACCTTCCTTGTCTTGAATCTTTGTCTTGACATTG 1091 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | | |||| || |||||||| | || || ||||| || || | ||||| ||| Sbjct 1092 TCAATGGTGTCTGAACTTTCCACCTCAAGAGTGATGGTCTTCCCGGTTAAGGTCTTAACA 1151 Query 45326 AAGATTTGCAT 45336 ||||||||||| Sbjct 1152 AAGATTTGCAT 1162 >seq53181 Length=15488 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||| | | | |||| ||| || ||| |||||| || ||||| || ||| | Sbjct 5521 CCACCTCTGAGACGCAGCACCAGGTGAAGGGTGGACTCCTTTTGTATGTTATAATCGGCC 5580 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 | | || |||| |||| ||||||||| || || || | | ||||||||| || || Sbjct 5581 AATGTTCGTCCGTCCTCCAATTGTTTTCCAGCAAAAATAAGTCTCTGTTGGTCCGGGGGA 5640 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || ||||| || ||||||| ||| || | | | | || || || ||| Sbjct 5641 ATCCCTTCCTTATCTTGAATTTTTGCCTTGACGTTATCGATGGTATCAGAACTTTCAACC 5700 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | ||||||||||| || || ||||| || ||||| |||||||| Sbjct 5701 TCAAGAGTAATCGTCTTACCTGTGAGAGTTTTAACAAATATTTGCAT 5747 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTC--AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCG 45202 |||||||||||||||||||||| | |||| | |||| |||| || || |||||| Sbjct 6012 CTCCTTCTGAATGTTGTAGTCGGCCAAAGTT--CTGCCGTCTTCCAACTGCTTACCGGCG 6069 Query 45203 AATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACC 45262 || ||||| ||||| || || ||||| | || ||||| ||| ||| || |||||| Sbjct 6070 AAGATCAAGCGCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGAATCTTAGCCTTAACG 6129 Query 45263 GCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTC 45322 | | | || || || || |||| ||| |||||||| || || || || || Sbjct 6130 TTGTCGATAGTATCAGAACTTTCGACTTCCAAGGTGATCGTCTTACCGGTGAGGGTTTTG 6189 Query 45323 ACAAAGATTTGCAT 45336 ||||| |||||||| Sbjct 6190 ACAAATATTTGCAT 6203 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 45108 CGCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGT 45167 |||||||||| | | | || | ||| || ||| |||||||||||||||||| || Sbjct 5291 CGCCACCTCTAAGACGGAGGACAAGGTGGAGTGTGGACTCCTTCTGAATGTTGTAATCAG 5350 Query 45168 TCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAG 45227 || ||| | || || ||||| || || || || || | || ||| || || || | Sbjct 5351 CAAGGGTGCGCCCATCCTCTAGTTGCTTCCCAGCAAAAATGAGCCTCTGCTGATCCGGGG 5410 Query 45228 GCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCA 45287 | | |||||||||||| ||| || ||| || | | | |||| | ||| | Sbjct 5411 GAATCCCCTCCTTGTCCTGAATCTTGGACTTCACATTATCTATGGTGTCTGAGCTCTCTA 5470 Query 45288 CCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 | || | ||||| ||||| || |||| ||||||||||| || ||||| Sbjct 5471 CTTCAAGTGTAATGGTCTTCCCAGTCAATGTCTTCACAAAAATCTGCAT 5519 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/194 (70%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCA--GTTGGCGATCGTCGTCCAGTTGTTTTCCGGCG 45202 |||||||||||| ||||| ||| || ||| | |||| |||| ||| || |||||| Sbjct 6240 CTCCTTCTGAATATTGTAATCGGCCAACGTT--CTGCCGTCTTCCAATTGCTTACCGGCG 6297 Query 45203 AATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACC 45262 || || | | ||| || || ||||| | |||||||||||| ||| || |||||| Sbjct 6298 AAGATAAGTCTCTGCTGATCAGGAGGAATTCCCTCCTTGTCCTGAATCTTCGCCTTAACG 6357 Query 45263 GCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTC 45322 | | | | || || ||| ||||| | || |||||||| || || || || || Sbjct 6358 TTGTCGATGGTATCTGAACTCTCGACCTCGAGAGTGATCGTCTTACCGGTTAGGGTTTTA 6417 Query 45323 ACAAAGATTTGCAT 45336 || ||||| ||||| Sbjct 6418 ACGAAGATCTGCAT 6431 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394006972833955