Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asclepias_20syriaca_20[genbank_20GCA_5F002018285.1_202017-03-03] 221,855 sequences; 236,770,010 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq34486 159 3e-34 >seq34486 Length=7597 Score = 159 bits (176), Expect = 3e-34 Identities = 558/855 (65%), Gaps = 17/855 (2%) Strand=Plus/Minus Query 13913 TTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTT 13972 || |||||||| | ||| || ||||| ||||| || || ||||| | || ||| Sbjct 4361 TTCTGATATTCTCCAACCCTCTTTTCGAAGAAATTGGTCTTACCCTGCAAACTGATAAGC 4302 Query 13973 TCCATAAAATCAAATGGATTTGTTGACATAA-ACACTTTATCACAACCTAGTTCTAATAG 14031 ||||| ||||||| ||||| || ||||| ||| ||| || | || | || ||| Sbjct 4301 TCCATCCAATCAAAAGGATT-GTGGACATTGTACATTTTTCCATATCCCAAGGCTCCTAG 4243 Query 14032 TAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAG 14091 |||||| ||||||| ||||||||||| ||| ||| | || | |||||| || | || Sbjct 4242 TAATCTGTCCGCAACAAACTCAATATACTGACTCATGAGGTCTCCATTCATCCCAAGCAG 4183 Query 14092 TTTTACA-GGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAA 14150 | ||| || | | || ||| || | ||||| ||| || ||| || || Sbjct 4182 TGC-ACATGGCAGCGCGTCACATACAAACTCCCTCTCTATTACCACGGCATCGGCTACAA 4124 Query 14151 TAATCGTAATAATTTCATTAGAAGGAGGATATTTT-AGATGTTTAAAAATTAAACACGCA 14209 | | |||| | || | | | | || | | | | | | ||| || ||| Sbjct 4123 TTCCCCTAATTCTCTCCTC-GCTCAACTTCACCTTCAAAAGGCTGTAGAGTAAGCAGGCA 4065 Query 14210 AAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGC 14269 || ||||||||||| ||||| || || ||| | ||||| || || ||||| || ||| Sbjct 4064 AAGTCACAATGAAGACCCTCGTCCCTCGAAATCAACTCGTTCGAGAAGGTTAAACCGGGC 4005 Query 14270 ATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGAT-CCGGAAAAGAATATTCC 14328 | || || || |||||||||||||| |||| ||| || | | ||||| || |||||||| Sbjct 4004 AATAAACCACGCTTTTTTAACCAAAAAATTG-AGCAAAAGCTTCCGGAGAAAAATATTCC 3946 Query 14329 CTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCA 14388 |||||| ||| || || | || || || | || ||| || || |||||| Sbjct 3945 CTCAACGCAAGCGAAAGCAACCAAACGCTCGGCGAAGGATTCTGAGCCGT---CTATCCA 3889 Query 14389 TTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAA 14448 || ||||| | | ||| |||| | || || || || || || | ||| | Sbjct 3888 TTGGAGGGCCCACTTGGCTTTCTTTTCCACGCAAGGGATGGTCTCGATTGCGTGAAAGAG 3829 Query 14449 ATGTTCCTTCTCTTT--AGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCA 14506 | |||||| || | | ||| |||||| || || | || | |||||||| || Sbjct 3828 CCTGTGCTTCTCGTTGGAATCCTT--AATGTACGTCTCCAACAGGAGACTATACATCTCG 3771 Query 14507 GAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGT 14566 ||||| || || || || ||||| ||||||||||| ||| | || || || || Sbjct 3770 GAGTGAATATTCTCGATGGCTATTTGAAAACCATAGAAAGCACGGGCCTCGGAAACCTGG 3711 Query 14567 ACCT-CTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAA 14625 |||| || | ||| | |||| | ||| || ||| || ||||| ||| ||||| Sbjct 3710 ACCTCCTTCATGAAA-CGACCGGCGAGATTCTCCAGAACAATGCCATCTGAAGCGGCAAA 3652 Query 14626 AAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTTTTTCCAATCGGC 14685 || || | | || ||||||||| | | || || | | ||||||| ||| | || Sbjct 3651 GAAGGCAAGAACGTGAGTAATAAAGTGTCGTTCATCGGGGGTAAGTTTTTCCCACTGGGA 3592 Query 14686 TAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTTTTTTATA 14745 | ||| ||| ||||| ||||| || | ||||| || ||| |||| || || || Sbjct 3591 AACATCTACAGAGAGATCGACTTCCTCGGCAGTCCAGAAGGAAGCCTCAGCCTTCTTGTA 3532 Query 14746 CATTACCCATATTTC 14760 ||| |||| || || Sbjct 3531 CATCTCCCAAATCTC 3517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 481007965211400