Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asclepias_20syriaca_20[genbank_20GCA_5F002018285.1_202017-03-03] 221,855 sequences; 236,770,010 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq53181 98.7 8e-16 seq31910 93.3 3e-14 seq31911 87.8 1e-12 >seq53181 Length=15488 Score = 98.7 bits (108), Expect = 8e-16 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| |||||| || || || ||||| ||||| || ||||||| |||| | || Sbjct 5536 AGCACCAGGTGAAGGGTGGACTCCTTTTGTATGTTATAATCGGCCAATGTTCGTCCGTCC 5595 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 ||||||||||| || ||| | |||||||| ||||| ||| ||| | ||||||||||| Sbjct 5596 TCCAATTGTTTTCCAGCAAAAATAAGTCTCTGTTGGTCCGGGGGAATCCCTTCCTTATCT 5655 Query 18234 GCAATTTGTTGCTTGAC 18250 ||||| | |||||| Sbjct 5656 TGAATTTTTGCCTTGAC 5672 >seq31910 Length=2189 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || | ||| |||| |||||| |||||||| || || ||||||||||| ||| Sbjct 586 CCACCACGGAGACGAAGCACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCTGCC 645 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || |||||||| ||| ||||| ||| |||| | || || || || ||| Sbjct 646 AGGGTGCGACCATCTTCCAGTTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCGGGGGGA 705 Query 18219 ACGCCTTCCTTATC 18232 | |||||||||||| Sbjct 706 ATGCCTTCCTTATC 719 Score = 87.8 bits (96), Expect = 1e-12 Identities = 162/232 (70%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || || || | ||| || | |||||| || ||||| || || || |||||||| || Sbjct 357 TCCACCACGGAGACGAAGGACAAGGTGAAGGGTGGATTCCTTCTGGATATTGTAGTCTGC 416 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 || || || |||||||| ||| ||||| ||| |||| | || || || || ||| Sbjct 417 CAGGGTGCGACCATCTTCCAGTTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCTGGGGG 476 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCT--- 18273 | |||||||||||| || | | || || || | ||| || | ||| ||| Sbjct 477 AATGCCTTCCTTATCCTGGATCT-TAGCTTTCACATTATCAATGGTAT--CCGAGCTCTC 533 Query 18274 CGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 | | |||| || ||| |||| || || | |||||| |||||||||||||| Sbjct 534 CACCTCCAAT-GTTATGGTTTTCCCAGTGAGTGTTTTAACAAAAATTTGCAT 584 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||||| | |||||| |||| |||||| |||||||| || |||||||||||||| || Sbjct 813 TCCTCCCCTCAATCTAAGGACCAAGTGAAGAGTTGATTCCTTCTGAATGTTGTAGTCTGC 872 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | || | |||||| | || || || ||| |||| | || || || || ||| Sbjct 873 AAGGGTCCGTCCATCTTCAAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGGGG 932 Query 18218 CACGCCTTCCTTATC 18232 | |||||||||||| Sbjct 933 AATGCCTTCCTTATC 947 >seq31911 Length=2244 Score = 87.8 bits (96), Expect = 1e-12 Identities = 162/233 (70%), Gaps = 10/233 (4%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||||| | |||||| |||| ||||| ||||||||||| |||||||||||||| || Sbjct 1050 TCCTCCCCTCAATCTAAGGACCAAATGAAGGGTTGATTCTTTCTGAATGTTGTAGTCTGC 1109 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | || | |||||| | || || || ||| |||| | ||| || || || ||| Sbjct 1110 AAGGGTCCGTCCATCTTCAAGCTGCTTTCCAGCAAAGATCAATCTCTGCTGGTCTGGGGG 1169 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTG--CTTGACCTGTGCAACAGTGTCACCGGGCT-- 18273 | ||||||||||| | | | ||| ||| || | ||| || | ||| ||| Sbjct 1170 AATACCTTCCTTATC--CTGTATCTTGGCCTTAACATTGTCAATGGTAT--CCGAGCTCT 1225 Query 18274 -CGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 | | |||| || ||| | || ||||| | ||||| || ||||||||||| Sbjct 1226 CCACCTCCAAT-GTTATGGTCTTCCCGGTGAGGGTTTTCACGAAAATTTGCAT 1277 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || | ||| |||| |||||| |||||||| || || ||||||||||| ||| Sbjct 595 CCACCACGGAGACGAAGCACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCTGCC 654 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || |||||||| ||| ||||| ||| |||| | || || || || ||| Sbjct 655 AGGGTGCGACCATCTTCCAGTTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCTGGGGGA 714 Query 18219 ACGCCTTCCTTATC 18232 | |||||||| || Sbjct 715 ATACCTTCCTTGTC 728 Score = 82.4 bits (90), Expect = 6e-11 Identities = 158/231 (68%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||||| | |||||| |||| ||||| ||||||||||| |||||||||||||| || Sbjct 822 TCCTCCCCTCAATCTAAGGACCAAATGAAGGGTTGATTCTTTCTGAATGTTGTAGTCTGC 881 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | || | |||||| | || || || ||| |||| | || || || || ||| Sbjct 882 AAGGGTCCGTCCATCTTCAAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCTGAGGG 941 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTG--CTTGACCTGTGCAACAGTGTCACCGGGCTCG 18275 | ||||||||||| | | | ||| ||| || | ||| || || | ||| Sbjct 942 AATACCTTCCTTATC--CTGTATCTTGGCCTTTACATTGTCAATGGTATCCGAGCTCTCC 999 Query 18276 GTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || | || ||| |||| ||||| | ||||| ||||| || |||||| Sbjct 1000 ACCTCTAGTGTTATGGTTTTTCCGGTGAGAGTTTTCACAAATATCTGCATT 1050 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 378318307761975