Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asclepias_20syriaca_20[genbank_20GCA_5F002018285.1_202017-03-03] 221,855 sequences; 236,770,010 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq34486 179 3e-40 seq53181 98.7 9e-16 seq23310 91.5 1e-13 seq42083 84.2 2e-11 seq24190 82.4 7e-11 >seq34486 Length=7597 Score = 179 bits (198), Expect = 3e-40 Identities = 408/603 (68%), Gaps = 13/603 (2%) Strand=Plus/Plus Query 57536 TAGATT-TGTCATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAAAAGGCAG 57594 |||||| ||| ||||| || || |||| || || |||||| | |||||||| ||||| | Sbjct 3486 TAGATTCTGT-ATGTTCCCAATCCAATACCCTGAGATTTGGGAGATGTACAAGAAGGCTG 3544 Query 57595 AAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATTGGGATT 57654 | || || || ||||| | ||| ||||| || || ||| ||| | | | ||||| Sbjct 3545 AGGCTTCCTTCTGGACTGCCGAGGAAGTCGATCTCTCTGTAGATGTTTCCCAGTGGGAAA 3604 Query 57655 CCCTCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCG 57714 || | ||| || | ||||||| ||||| | || || || ||||| || | Sbjct 3605 AACTTACCCCCGATGAACGACACTTTATTACTCACGTTCTTGCCTTCTTTGCCGCTTCAG 3664 Query 57715 ATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAA--GAAGTGCAAGTGACGGA 57772 |||| |||||| |||||| | | || | ||||| | || || || || | || Sbjct 3665 ATGGCATTGTTCTGGAGAATCTCGCCGGTCG--TTTCATGAAGGAGGTCCAGGTTTCCGA 3722 Query 57773 GGCGAGATGCTTT-TACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATT 57831 ||| | |||||| || || |||||| | ||||| || || | || || || |||||| Sbjct 3723 GGCCCG-TGCTTTCTATGGTTTTCAAATAGCCATCGAGAATATTCACTCCGAGATGTATA 3781 Query 57832 CGCTACTCATCGATACGTACGTGAAGGACAACGACGAGAAACGTAGACTGTTCAACGCGA 57891 || || | || |||||| | ||||| | ||||||| | || || || |||| | Sbjct 3782 GTCTCCTGTTGGAGACGTACATTAAGGATTCCAACGAGAAGCACAGGCTCTTTCACGCAA 3841 Query 57892 TCGAAACAATGCCC-GCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGC 57950 |||| || || || ||| | | ||||| || ||||| | || |||||||| | | Sbjct 3842 TCGAGACCATCCCTTGCG-TGGAAAAGAAAGCCAAGTGGGCCCTCCAATGGATAGA---C 3897 Query 57951 GCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTT 58010 | | | | | ||||||||| | | | || ||||| ||| || || ||||| || Sbjct 3898 GGCTCAGAATCCTTCGCCGAGCGTTTGGTTGCTTTCGCTTGCGTTGAGGGAATATTTTTC 3957 Query 58011 TCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACG 58070 || || |||||| |||| |||||| | || || || || | ||||||| | || Sbjct 3958 TCCGGAAGCTTTTGCTCAATTTTTTGGTTAAAAAAGCGTGGTTTATTGCCCGGTTTAACC 4017 Query 58071 TTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATG 58130 || ||||||||||| ||| | ||||||||||| ||| ||| ||||| ||| || | Sbjct 4018 TTCTCGAACGAGTTGATTTCGAGGGACGAGGGTCTTCATTGTGACTTTGCCTGCTTACTC 4077 Query 58131 TAC 58133 ||| Sbjct 4078 TAC 4080 >seq53181 Length=15488 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || || ||||| ||||| || ||||| || | || |||||| || Sbjct 5747 ATGCAAATATTTGTTAAAACTCTCACAGGTAAGACGATTACTCTTGAGGTTGAAAGTTCT 5688 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| | ||||| | ||| || |||||||| | || || ||||| Sbjct 5687 GATACCATCGATAACGTCAAGGCAAAAATTCAAGATAAGGAAGGGATTCCCCCGGACCAA 5628 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || || ||||| ||||| ||||| ||| || || |||||||||| Sbjct 5627 CAGAGACTTATTTTTGCTGGAAAACAATTGGAGGACGGACGAACATTGGCCGATTATAAC 5568 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || ||||| || || || ||||| ||||| || | || || || |||| Sbjct 5567 ATACAAAAGGAGTCCACCCTTCACCTGGTGCTGCGTCTCAGAGGTGGTA 5519 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || || || || || || || ||||||||| | || || ||| || Sbjct 6203 ATGCAAATATTTGTCAAAACCCTCACCGGTAAGACGATCACCTTGGAAGTCGAAAGTTCT 6144 Query 31253 GACAGTGTCGA-AACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | | |||| |||| | | | ||| | ||| |||||||| | || || || || Sbjct 6143 GATACTATCGACAACGTTAAGGCTAAGATTCA-GGATAAGGAAGGAATTCCTCCTGATCA 6085 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| | || ||||| || || |||||||||||| | ||| || ||| || || Sbjct 6084 GCAGCGCTTGATCTTCGCCGGTAAGCAGTTGGAAGACGGCAGAACTTTGGCCGACTACAA 6025 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGT 31401 |||||| || || || || |||||||| || Sbjct 6024 CATTCAGAAGGAGTCTACCCTTCATCTTGT 5995 Score = 84.2 bits (92), Expect = 2e-11 Identities = 160/233 (69%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || || || || || || || || || || || || |||| || || Sbjct 6662 AAGATGCAGATCTTTGTCAAAACCCTAACCGGTAAGACAATTACTCTCGAAGTCGAGAGT 6603 Query 31250 TCCGACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 ||||| | |||| | ||||| || ||| | |||||||||||| | || || || Sbjct 6602 TCCGATACCATCGATAATGTCAAGACTAAGA-TCCAAGACAAGGAAGGCATCCCTCCGGA 6544 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 ||||||||||| ||||| || || |||||| | || ||| || | |||||| Sbjct 6543 TCAGCAGCGTCTCATATTTGCCGGTAAACAGCTTGAGGACGGCCGTACACTTGCCGATTA 6484 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||| ||||| || || || || || ||||| || || |||| | ||||||| Sbjct 6483 TAATATTCAGAAGGAGTCCACCCTCCATCTTGTTCTCCGACTCCGTGGCGGTA 6431 >seq23310 Length=1212 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| |||||| |||| || || || ||||| | || || || || Sbjct 935 CATGCAGATATTCGTGAAGACTTTGACTGGTAAGACCATCACTTTGGAAGTGGAGAGCTC 876 Query 31252 CGACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310 |||| | || | ||||| || ||| | ||||||||||||| | || || || | Sbjct 875 AGACACCATTGATAATGTCAAGACCAAGATTCA-GGACAAGGAAGGCATTCCTCCAGATC 817 Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATA 31370 |||| || | || || ||||| || ||| | || || | ||| | || || | Sbjct 816 AGCAACGCTTGATTTTTGCTGGAAAGCAGCTTGAGGATGGGAGGACCCTTGCTGACTACA 757 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 | || || || ||||||||||||||| |||| || |||||||||| || Sbjct 756 ATATCCAGAAGGAATCGACTCTTCATTTGGTGCTGCGACTGAGGGGTGG 708 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| |||| || || || || || | || || || || Sbjct 707 CATGCAGATATTCGTGAAGACATTGACTGGGAAGACCATTACTTTGGAAGTGGAGAGCTC 648 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | | || | || || | || ||||||||||||| | || || || || Sbjct 647 AGACACTATTGACAATGTTAAGGCCAAGATTCAGGACAAGGAAGGCATTCCTCCAGATCA 588 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATA 31370 ||||||||| || ||||||||||||||| | || || | | | || | || |||| Sbjct 587 GCAGCGTCTGATTTTCGCTGGCAAACAGCTCGACGA-TGGACGAACCCTTGCTGACTATA 529 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 | || |||||||| || || || || || || ||| | ||||| || ||| Sbjct 528 ATATCCAAAAAGAGTCCACCCTCCACCTTGTTCTTCGCCTGAGAGGTGGT 479 >seq42083 Length=68989 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || ||||| || || || || || || || || || | || ||||| | Sbjct 15363 AAGATGCAGATCTTCGTGAAAACCCTAACCGGTAAGACCATTACTTTGGAGGTTGAGTCC 15304 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 ||||| | | || | ||||| | ||| ||| ||||| ||| | ||||| || Sbjct 15303 TCCGATACCATTGACAATGTCAAGGCTAAGATACAGGATAAGGAGGGCATCCCGCCAGAT 15244 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGC-GATTA 31368 |||||||| || || ||||| ||||| ||| | || ||| | ||| | ||| ||||| Sbjct 15243 CAGCAGCGGCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCAGGACCCT-AGCTGATTA 15185 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGT 31401 |||||| || || || || || | |||||||| Sbjct 15184 TAACATCCAGAAGGAGTCAACCTTGCATCTGGT 15152 >seq24190 Length=3131 Score = 82.4 bits (90), Expect = 7e-11 Identities = 159/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || ||||| || || || || || || || || || | || |||||| | Sbjct 1251 AAGATGCAGATCTTCGTCAAAACCCTAACGGGTAAGACAATTACTCTGGAGGTTGAATCC 1310 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 ||||||| | || | ||||| | ||| ||||||||||| | || || || Sbjct 1311 TCCGACACCATTGACAATGTCAAGGCTAAAATCCAAGACAAGGAAGGAATTCCACCAGAT 1370 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGC-GATTA 31368 |||||||| || || ||||| || || ||| | || || | ||| | ||| ||||| Sbjct 1371 CAGCAGCGGCTCATCTTCGCCGGAAAGCAGCTCGAGGATGGCAGGACCCT-AGCGGATTA 1429 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 ||||| || || || || || || |||||||| || | ||| | || ||| Sbjct 1430 CAACATCCAGAAGGAGTCAACCCTGCATCTGGTTCTCCGTCTGCGCGGTGGT 1481 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444530206191600