Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asclepias_20syriaca_20[genbank_20GCA_5F002018285.1_202017-03-03] 221,855 sequences; 236,770,010 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq34486 214 2e-50 >seq34486 Length=7597 Score = 214 bits (236), Expect = 2e-50 Identities = 596/910 (65%), Gaps = 16/910 (2%) Strand=Plus/Minus Query 33291 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33350 || || ||||| || || | |||||||| ||||| || || || | ||| ||| Sbjct 4361 TTCTGATATTCTCCAACCCTCTTTTCGAAGAAATTGGTCTTACCCTGCAAACTGATAAGC 4302 Query 33351 TCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAATC 33410 ||||| ||||||| |||||| |||||||| |||||| | ||||||| | | Sbjct 4301 TCCATCCAATCAAAAGGATTGTGGACATTGTACATTTTTCCATATCCCAAGGCTCCTAGT 4242 Query 33411 AATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAGT 33470 ||||| || || || || || ||||| |||| | || | |||||| || | ||| Sbjct 4241 AATCTGTCCGCAACAAACTCAATATACTGACTCATGAGGTCTCCATTCATCCCAAGCAGT 4182 Query 33471 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAATA 33530 | ||| || || || | ||| || || || || |||| | || ||| Sbjct 4181 GCACATGGCAGCGCGTCACATACAAACTCCCTCTCTATTACCACGGCATCGGCTACAATT 4122 Query 33531 AATCTAACGGTTTCTTCACTCGGTGGATGTAAT----AAATGTTTAAACATCAAACATGC 33586 |||| |||| |||| | | | | ||| | | | | || || || Sbjct 4121 CCCCTAA----TTCTCTCCTCGCTCAACTTCACCTTCAAAAGGCTGTAGAGTAAGCAGGC 4066 Query 33587 GAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGG 33646 || || || || ||||||||||| || ||| || ||||| || || || | ||||| Sbjct 4065 AAAGTCACAATGAAGACCCTCGTCCCTCGAAATCAACTCGTTCGAGAAGGTTAAACCGGG 4006 Query 33647 CATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGAT-CCGGAAAAGAAGATTC 33705 || || ||||||||||| | |||||| || || || || | | ||||| || || |||| Sbjct 4005 CAATAAACCACGCTTTTTTAACCAAAAAATTGA-GCAAAAGCTTCCGGAGAAAAATATTC 3947 Query 33706 CTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCGCTGTCATGTATCC 33762 | || || ||| || |||| | | ||| | | | | || ||| ||||| Sbjct 3946 CCTCAACGCAAGCGAAAGCAACCAAACGCTCGGCGAAGGATTCTGAGCCGTC---TATCC 3890 Query 33763 ACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGA 33822 | | | ||||| | ||| ||||||| || ||||| || || || || || | ||||| Sbjct 3889 ATTGGAGGGCCCACTTGGCTTTCTTTTCCACGCAAGGGATGGTCTCGATTGCGTGAAAGA 3830 Query 33823 GATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCG 33882 | || || || || ||| |||| || || || | || ||||||||||| || | Sbjct 3829 GCCTGTGCTTCTCGTTGGAATCCTTAATGTACGTCTCCAACAGGAGACTATACATCTCGG 3770 Query 33883 AATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCA 33942 | ||||| || || ||||| || ||||| || |||||| | ||||||| || ||| | Sbjct 3769 AGTGAATATTCTCGATGGCTATTTGAAAACCATAGAAAGCACGGGCCTCGGAAACCTGGA 3710 Query 33943 CTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAA 34002 | || | || || | || | ||| || || || ||||| || ||||| | Sbjct 3709 CCTCCTTCATGAAACGACCGGCGAGATTCTCCAGAACAATGCCATCTGAAGCGGCAAAGA 3650 Query 34003 ACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGA 34062 | || | || || | ||||| | | ||| || || || ||||| | ||| | | Sbjct 3649 AGGCAAGAACGTGAGTAATAAAGTGTCGTTCATCGGGGGTAAGTTTTTCCCACTGGGAAA 3590 Query 34063 TATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACA 34122 |||| ||| | ||| ||||| || | ||||| || || ||||| ||||| || |||| Sbjct 3589 CATCTACAGAGAGATCGACTTCCTCGGCAGTCCAGAAGGAAGCCTCAGCCTTCTTGTACA 3530 Query 34123 TATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTTGGTGCAA 34182 | | ||| || ||| | |||||||||||||| ||| ||||||| || ||||| || | Sbjct 3529 TCTCCCAAATCTCAGGGTATTGGATTGGGAACATACAGAATCTATCAGGGTTTGGGGCCA 3470 Query 34183 GGATAGGTTC 34192 ||| ||| || Sbjct 3469 GGAGAGGCTC 3460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628070997704400