Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asclepias_20syriaca_20[genbank_20GCA_5F002018285.1_202017-03-03] 221,855 sequences; 236,770,010 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq34486 111 1e-19 seq60807 89.7 5e-13 seq168628 82.4 7e-11 seq19857 82.4 7e-11 >seq34486 Length=7597 Score = 111 bits (122), Expect = 1e-19 Identities = 385/594 (65%), Gaps = 10/594 (2%) Strand=Plus/Minus Query 11626 TAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGT 11685 ||| || ||||| |||||||| | ||| ||||| || || | || || || || || Sbjct 4074 TAAGCAGGCAAAGTCACAATGAAGACCCTCGTCCCTCGAAATCAACTCGTTCGAGAAGGT 4015 Query 11686 TAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAA-CCAGAAA 11744 ||| ||||||| || || || ||||||| |||||| || | |||||| | || || | Sbjct 4014 TAAACCGGGCAATAAACCACGCTTTTTTAACCAAAAAATTG-AGCAAAAGCTTCCGGAGA 3956 Query 11745 AGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTGCTAG 11804 | ||||||||||| || || || || || | | || | | | || Sbjct 3955 AAAATATTCCCTCAACGCAAGCGAAAGCAACCAAACGCTCGGCGAAGGATTCTGAGCCGT 3896 Query 11805 ATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGT 11864 |||||||| |||||| | |||||||||| ||||| || || || || |||| Sbjct 3895 CTATCCATTGGAGGGCCCACTTGGCTTTCTTTTCCACGCAAGGGATGGTCTCGATTGCGT 3836 Query 11865 TAAATAAA---TGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTAT 11921 ||| | ||| || || | ||| | | || || || | | | ||||| Sbjct 3835 GAAAGAGCCTGTGC---TTCTCGTTGGAATCCTTAATGTACGTCTCCAACAGGAGACTAT 3779 Query 11922 ACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTG 11981 |||| || || |||||||| || || ||||||||||| ||||||||| || ||||| | Sbjct 3778 ACATCTCGGAGTGAATATTCTCGATGGCTATTTGAAAACCATAGAAAGCACGGGCCTCGG 3719 Query 11982 AACACTGTACATCC-ACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTA 12040 || ||| || ||| ||| ||| | | || | |||||| ||||| ||||| | Sbjct 3718 AAACCTGGACCTCCTTCATGAAA-CGACCGGCGAGATTCTCCAGAACAATGCCATCTGAA 3660 Query 12041 GATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCC 12100 | ||||| || || || | || | ||||||| | ||| || || | ||| ||| Sbjct 3659 GCGGCAAAGAAGGCAAGAACGTGAGTAATAAAGTGTCGTTCATCGGGGGTAAGTTTTTCC 3600 Query 12101 CAATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGAT 12160 || | | |||| || | ||| ||||| || | ||||| || ||| | | Sbjct 3599 CACTGGGAAACATCTACAGAGAGATCGACTTCCTCGGCAGTCCAGAAGGAAGCCTCAGCC 3540 Query 12161 TGTTTATACATTTTCCAGATATCATGATACTTAATAGGGAAAATAACGAACCTA 12214 | || ||||| | ||| || ||| | || | || ||||| ||| ||| ||| Sbjct 3539 TTCTTGTACATCTCCCAAATCTCAGGGTATTGGATTGGGAACATACAGAATCTA 3486 >seq60807 Length=868 Score = 89.7 bits (98), Expect = 5e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 38410 GGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAA 38469 |||||||| || || || | |||||||| ||||| | |||||| ||| |||| || Sbjct 418 GGAGTTCCAGCATTGAAAAGGGTAGGAGACGCATGAGTAAACCATCTTTGGGACATCAAA 477 Query 38470 TTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATT 38529 | ||||||| ||| || | || || ||| | ||| || || | ||| |||||||| Sbjct 478 TGATATGTTCTTATAGCAGCTTCAATGTCATCCTTGTGGATCCCAACAGAAACCCTCATC 537 Query 38530 AGCATATGTTGTGGTCTTTCTATTATTTT 38558 | ||| |||||||||||||| | || ||| Sbjct 538 AACATGTGTTGTGGTCTTTCAACTACTTT 566 >seq168628 Length=295 Score = 82.4 bits (90), Expect = 7e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 37159 ACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATATT 37218 ||||||| ||||||||||| ||||||||| |||| |||||||||| | | ||| Sbjct 44 ACTCTTCGATTATATATATTGGAAGTATATGGCTCAAAACACTCATTATTCCCAAGAATT 103 Query 37219 TGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCTCAATCCAT 37273 ||| || || ||||| ||||||||||||| ||||| |||||| | |||| Sbjct 104 TGACTAGTTGAAGCAGTTGGCATTGGTGCTACAAGAAGTGAATTTCTTACACCAT 158 >seq19857 Length=23048 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 38410 GGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAA 38469 |||||||| || || || | |||||||||||||| | |||||| ||| |||| || Sbjct 1402 GGAGTTCCAGCATTGAAAAGGGTAGGAGATGCATGAGTAAACCATCTTTGGGACATCAAA 1343 Query 38470 TTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATT 38529 | ||| ||| ||| || | || ||| || | ||| || || | ||| |||||||| Sbjct 1342 TGATACGTTCTTATAGCAGCTTCAATACCATCCTTGTGGATCCCAACAGAAACCCTCATC 1283 Query 38530 AGCATATGTTGTGGTCTTTC 38549 | ||| |||||||| ||||| Sbjct 1282 AACATGTGTTGTGGCCTTTC 1263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 467225492881200