Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asclepias_20syriaca_20[genbank_20GCA_5F002018285.1_202017-03-03] 221,855 sequences; 236,770,010 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq34486 178 2e-39 >seq34486 Length=7597 Score = 178 bits (196), Expect = 2e-39 Identities = 395/590 (67%), Gaps = 2/590 (0%) Strand=Plus/Minus Query 36155 AAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTG 36214 || || || || || || || ||||||||||| || ||| || ||||| || || || Sbjct 4073 AAGCAGGCAAAGTCACAATGAAGACCCTCGTCCCTCGAAATCAACTCGTTCGAGAAGGTT 4014 Query 36215 AGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAA 36273 | ||||||| || ||||||||||| | |||||| || || ||||| | | || || || Sbjct 4013 AAACCGGGCAATAAACCACGCTTTTTTAACCAAAAAATTGA-GCAAAAGCTTCCGGAGAA 3955 Query 36274 GAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATG 36333 || ||||| || || || || |||| | | ||| | | | | | | Sbjct 3954 AAATATTCCCTCAACGCAAGCGAAAGCAACCAAACGCTCGGCGAAGGATTCTGAGCCGTC 3895 Query 36334 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATT 36393 |||||| | | ||||| | ||| ||||||| || ||||| || ||||| || || | Sbjct 3894 TATCCATTGGAGGGCCCACTTGGCTTTCTTTTCCACGCAAGGGATGGTCTCGATTGCGTG 3835 Query 36394 AAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACAT 36453 |||||| || || || || ||| |||| || || || | || ||||||||||| Sbjct 3834 AAAGAGCCTGTGCTTCTCGTTGGAATCCTTAATGTACGTCTCCAACAGGAGACTATACAT 3775 Query 36454 TTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 36513 || || ||||| || || ||||| |||||||| || |||||| | ||||||| || Sbjct 3774 CTCGGAGTGAATATTCTCGATGGCTATTTGAAAACCATAGAAAGCACGGGCCTCGGAAAC 3715 Query 36514 CTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGC 36573 ||| || || | || || | || | ||| || || || || || || || Sbjct 3714 CTGGACCTCCTTCATGAAACGACCGGCGAGATTCTCCAGAACAATGCCATCTGAAGCGGC 3655 Query 36574 AAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAATC 36633 ||| || || | || || | ||||| | | ||| | || || ||||| | ||| | Sbjct 3654 AAAGAAGGCAAGAACGTGAGTAATAAAGTGTCGTTCATCGGGGGTAAGTTTTTCCCACTG 3595 Query 36634 ATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTT 36693 | |||| ||| | ||| ||||| || | ||||| || || ||||| ||||| || Sbjct 3594 GGAAACATCTACAGAGAGATCGACTTCCTCGGCAGTCCAGAAGGAAGCCTCAGCCTTCTT 3535 Query 36694 ATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTAT 36743 ||||| | ||| || ||| | ||||| ||||| || ||| ||||||| Sbjct 3534 GTACATCTCCCAAATCTCAGGGTATTGGATTGGGAACATACAGAATCTAT 3485 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 656347563418200