Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asclepias_20syriaca_20[genbank_20GCA_5F002018285.1_202017-03-03] 221,855 sequences; 236,770,010 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq23310 105 7e-18 seq53181 98.7 1e-15 seq4370 84.2 2e-11 >seq23310 Length=1212 Score = 105 bits (116), Expect = 7e-18 Identities = 168/236 (71%), Gaps = 4/236 (2%) Strand=Plus/Plus Query 139531 GACATGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATA 139590 ||||| || |||| | || | ||| | ||| | || ||||||||||| || ||||| Sbjct 473 GACATAACCACCTCTCAGGCGAAGAACAAGGTGGAGGGTGGACTCTTTTTGGATATTATA 532 Query 139591 ATCGCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGAT 139649 || | || | || | || ||||||||||| ||||| | |||||||| ||||||| Sbjct 533 GTCAGCAAGGGTTCGTCCA-TCGTCGAGCTGTTTGCCAGCGAAAATCAGACGCTGCTGAT 591 Query 139650 CGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTG 139708 | ||||| |||||||| ||||| ||| | || | ||| | | || | ||||| | | Sbjct 592 CTGGAGGAATGCCTTCCTTGTC-CTGAATCTTGGCCTTAACATTGTCAATAGTGTCTGAG 650 Query 139709 GGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||| || | || | ||||| || ||||| || || |||||||| ||||| Sbjct 651 CTCTCCACTTCCAAAGTAATGGTCTTCCCAGTCAATGTCTTCACGAATATCTGCAT 706 Score = 86.0 bits (94), Expect = 6e-12 Identities = 114/156 (73%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 || || ||||| || |||||| | |||| ||||||||||| ||||| |||||||| ||| Sbjct 780 TCCTCAAGCTGCTTTCCAGCAAAAATCAAGCGTTGCTGATCTGGAGGAATGCCTTCCTTG 839 Query 139670 TCGGTGATTTTTTGT-TTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 || ||| | || || || | | || | ||||| | | |||||| || | || | Sbjct 840 TC-CTGAATCTTGGTCTTGACATTATCAATGGTGTCTGAGCTCTCCACTTCCAAAGTGAT 898 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| || ||||| || || |||||||| ||||| Sbjct 899 GGTCTTACCAGTCAAAGTCTTCACGAATATCTGCAT 934 >seq53181 Length=15488 Score = 98.7 bits (108), Expect = 1e-15 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 |||||||| || || || ||||||||| || || ||| |||||| | ||| || || Sbjct 5779 GTAGACTCCTTCTGGATATTATAATCGGCCAAGGTTCTCCCGTCTTCCAACTGCTTCCCG 5838 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| ||||||| || |||||||| ||||| || ||||| ||||| ||| | || | || Sbjct 5839 GCAAAGATCAGGCGCTGCTGATCAGGAGGGATCCCTTCCTTGTCC-TGAATCTTAGCCTT 5897 Query 139688 AGCTGT-TCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | | || | ||| || | ||| || || | ||| | ||||| || || | || Sbjct 5898 AACGTTGTCGATTGTATCAGAACTCTCGACTTCCAAGGTAATAGTCTTACCTGTGAGAGT 5957 Query 139747 TTTTACGAATATTTGCAT 139764 ||| || ||||||||||| Sbjct 5958 TTTGACAAATATTTGCAT 5975 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 139552 CAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTC 139611 |||||| | |||| |||||||| || |||||||| || ||| || || || ||| Sbjct 5991 CAAAACAAGATGAAGGGTAGACTCCTTCTGAATGTTGTAGTCGGCCAAAGTTCTGCCGTC 6050 Query 139612 TTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 139671 ||| | ||| ||||| || |||||| || |||||||| ||||| || ||||| || || Sbjct 6051 TTCCAACTGCTTACCGGCGAAGATCAAGCGCTGCTGATCAGGAGGAATTCCTTCCTTATC 6110 Query 139672 GGTGATTTTTTGTTTTAGCTGT-TCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCG 139730 ||| | || | ||| | | || | || || | || || || | ||| | || Sbjct 6111 C-TGAATCTTAGCCTTAACGTTGTCGATAGTATCAGAACTTTCGACTTCCAAGGTGATCG 6169 Query 139731 TCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| ||||| | ||||| || ||||||||||| Sbjct 6170 TCTTACCGGTGAGGGTTTTGACAAATATTTGCAT 6203 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || ||||| ||||||||| | ||| | ||| || ||||||||||| Sbjct 6463 GTGGACTCCTTCTGAATATTATAATCGGCAAGTGTACGGCCGTCCTCAAGCTGTTTACCG 6522 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| | || ||||| |||||||| ||||| |||||||| ||||| ||| || || Sbjct 6523 GCAAATATGAGACGCTGCTGATCCGGAGGGATGCCTTCCTTGTCTTGGATCTTAGTCTTG 6582 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | || |||| ||| || || | || | ||||| ||||| | ||| Sbjct 6583 ACATTATCGATGGTATCGGAACTCTCGACTTCGAGAGTAATTGTCTTACCGGTTAGGGTT 6642 Query 139748 TTTACGAATATTTGCAT 139764 || || || || ||||| Sbjct 6643 TTGACAAAGATCTGCAT 6659 >seq4370 Length=4242 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || ||||| | || ||||| || || ||||| ||||| | |||| ||||| Sbjct 3238 ACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAATCTGCGAGGGTGCGGCCATCTTCA 3297 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 || ||||||||||| |||||| | |||||||| ||||| || ||||| || || | Sbjct 3298 AGTTGTTTACCAGCGAAGATCAACCTCTGCTGATCTGGAGGAATACCTTCCTTATCTTGG 3357 Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735 || ||| || | | || | || || | | ||| ||||| | || | || || Sbjct 3358 ATCTTTGCCTTAACATTATCGATGGTATCCGAGCTCTCGACCTCGAGAGTAATGGTTTTT 3417 Query 139736 CCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| | |||||||||||||||||||| Sbjct 3418 CCGGTGAGGGTTTTTACGAATATTTGCAT 3446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494688321516000