Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asclepias_20syriaca_20[genbank_20GCA_5F002018285.1_202017-03-03] 221,855 sequences; 236,770,010 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq34486 210 3e-49 seq60807 86.0 9e-12 seq113474 84.2 3e-11 >seq34486 Length=7597 Score = 210 bits (232), Expect = 3e-49 Identities = 593/903 (66%), Gaps = 16/903 (2%) Strand=Plus/Minus Query 49669 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 49728 || || ||||| || || | |||||||| ||||| || || || | ||| ||| Sbjct 4361 TTCTGATATTCTCCAACCCTCTTTTCGAAGAAATTGGTCTTACCCTGCAAACTGATAAGC 4302 Query 49729 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 49788 ||||| ||||||| |||||| ||||| || |||||| | ||||||| | | Sbjct 4301 TCCATCCAATCAAAAGGATTGTGGACATTGTACATTTTTCCATATCCCAAGGCTCCTAGT 4242 Query 49789 AATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 49848 ||||| ||||| ||||| || ||||| |||| | || | |||||| || | ||| Sbjct 4241 AATCTGTCCGCAACAAACTCAATATACTGACTCATGAGGTCTCCATTCATCCCAAGCAGT 4182 Query 49849 TTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATA 49908 | ||| || || || | ||| || || || || ||||| | || ||| Sbjct 4181 GCACATGGCAGCGCGTCACATACAAACTCCCTCTCTATTACCACGGCATCGGCTACAATT 4122 Query 49909 GATCTAACGGTTTCTTCACTCGGTGGA-TGCAAT---AAATGTTTAAACATCAAACATGC 49964 |||| |||| |||| | | | || ||| | | | | || || || Sbjct 4121 CCCCTAA----TTCTCTCCTCGCTCAACTTCACCTTCAAAAGGCTGTAGAGTAAGCAGGC 4066 Query 49965 GAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGG 50024 || || || || ||||||||||| || ||| | ||||| || || || | ||||| Sbjct 4065 AAAGTCACAATGAAGACCCTCGTCCCTCGAAATCAACTCGTTCGAGAAGGTTAAACCGGG 4006 Query 50025 CATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAC-CCAGAAAAGAAGATTC 50083 || || ||||||||||| | |||||| || || ||||| | || || || || |||| Sbjct 4005 CAATAAACCACGCTTTTTTAACCAAAAAATTGA-GCAAAAGCTTCCGGAGAAAAATATTC 3947 Query 50084 CTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATA--ACTG-GCGCTGTCATGTATCC 50140 | || || || || ||||| | | ||| | | | | | || ||| ||||| Sbjct 3946 CCTCAACGCAAGCGAAAGCAACCAAACGCTCGGCGAAGGATTCTGAGCCGTC---TATCC 3890 Query 50141 ACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGA 50200 | | | ||||| | ||| ||||||| || ||||| || || || || || | ||||| Sbjct 3889 ATTGGAGGGCCCACTTGGCTTTCTTTTCCACGCAAGGGATGGTCTCGATTGCGTGAAAGA 3830 Query 50201 GATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCG 50260 | || || || || ||| |||| || || || | || ||||||||||| || | Sbjct 3829 GCCTGTGCTTCTCGTTGGAATCCTTAATGTACGTCTCCAACAGGAGACTATACATCTCGG 3770 Query 50261 AATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCA 50320 | ||||| || || ||||| || ||||| || |||||| | ||||||| || ||| | Sbjct 3769 AGTGAATATTCTCGATGGCTATTTGAAAACCATAGAAAGCACGGGCCTCGGAAACCTGGA 3710 Query 50321 CTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAA 50380 | || | || || | || | ||| || || || || || || ||||| | Sbjct 3709 CCTCCTTCATGAAACGACCGGCGAGATTCTCCAGAACAATGCCATCTGAAGCGGCAAAGA 3650 Query 50381 ACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTGA 50440 | || | || || | ||||| ||| ||| | ||| || ||||| | ||| | | Sbjct 3649 AGGCAAGAACGTGAGTAATAAAGTGTCGTTCATCGGGGGTAAGTTTTTCCCACTGGGAAA 3590 Query 50441 TATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACA 50500 |||| ||| | ||| ||||| || | ||||| || || ||||| ||||| || |||| Sbjct 3589 CATCTACAGAGAGATCGACTTCCTCGGCAGTCCAGAAGGAAGCCTCAGCCTTCTTGTACA 3530 Query 50501 TATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTTGGTGCAA 50560 | | ||| || ||| | |||||||||||||| ||| ||||||| || ||||| || | Sbjct 3529 TCTCCCAAATCTCAGGGTATTGGATTGGGAACATACAGAATCTATCAGGGTTTGGGGCCA 3470 Query 50561 GGA 50563 ||| Sbjct 3469 GGA 3467 >seq60807 Length=868 Score = 86.0 bits (94), Expect = 9e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 80334 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 80393 |||||| ||||| || | ||||||||| || || ||||||||| ||| |||| | || Sbjct 420 AGTTCCAGCATTGAAAAGGGTAGGAGACGCATGAGTAAACCATCTTTGGGACATCAAATG 479 Query 80394 GTACGTCTCAATAGCTGATTCTATATCC-CATTGATGAATTCCTACCGCGACACGCATTA 80452 || || ||||| | ||| || || | ||| || || || || | || | ||| | Sbjct 480 ATATGTTCTTATAGCAGCTTCAATGTCATCCTTG-TGGATCCCAACAGAAACCCTCATCA 538 Query 80453 ACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCA 80512 ||||||| || ||||||||||| | || || | || || | |||||| | || | Sbjct 539 ACATGTGTTGTGGTCTTTCAACTACTTTTCCATGGACCTTTAAGAGGTAAGACCTCTCAA 598 Query 80513 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 80561 |||||| || ||||| || | || |||||| || || || || || Sbjct 599 GAGTTTTGAAGCCAAAGTAATCATAATCAAAGTCCCGATCATAGATTAT 647 >seq113474 Length=757 Score = 84.2 bits (92), Expect = 3e-11 Identities = 159/233 (68%), Gaps = 1/233 (0%) Strand=Plus/Plus Query 80085 TCGT-TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTG 80143 |||| ||| |||||| || || | || ||| || | |||| | || | || ||||| Sbjct 156 TCGTCTTGCCTCCTCCTTGTTCCACATAAGGAGCAGTATCATTAAATACCCGCAGCATTG 215 Query 80144 GAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATAT 80203 | | ||||||||||||||| ||||| || || ||||| |||||| | || || || | Sbjct 216 GCACAATACCATTGGATGTCCCATTTGTACCTCGAATATAACTTCCAGTTGCTCGGATGT 275 Query 80204 TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACG 80263 | ||| || ||||| || || || || ||| ||| || ||| || | | Sbjct 276 TGTGAATAGAAAGACCAATCCCTCCAGCTGATTTGCTGATATCAGCACATTCCTTAAGGG 335 Query 80264 TATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTA 80316 ||||||| ||||| || ||||| || || ||||| | | ||||||||| Sbjct 336 TATCATAAATGCCTTCAATGCTGTCTTCTTTCATGCACACCAAGAAACAGCTA 388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716276905942200