Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asclepias_20syriaca_20[genbank_20GCA_5F002018285.1_202017-03-03] 221,855 sequences; 236,770,010 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq34486 156 4e-33 >seq34486 Length=7597 Score = 156 bits (172), Expect = 4e-33 Identities = 557/855 (65%), Gaps = 17/855 (2%) Strand=Plus/Minus Query 13581 TTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTT 13640 || |||||||| | ||| || ||||| ||||| || || ||||| | || ||| Sbjct 4361 TTCTGATATTCTCCAACCCTCTTTTCGAAGAAATTGGTCTTACCCTGCAAACTGATAAGC 4302 Query 13641 TCCATAAAATCAAATGGATTTATTGACATAA-ACACTTTATCACAACCTAGTTCTAATAG 13699 ||||| ||||||| ||||| | ||||| ||| ||| || | || | || ||| Sbjct 4301 TCCATCCAATCAAAAGGATTG-TGGACATTGTACATTTTTCCATATCCCAAGGCTCCTAG 4243 Query 13700 TAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAG 13759 |||||| || |||| |||||||||||| ||| ||| | || | |||||| || | || Sbjct 4242 TAATCTGTCCGCAACAAACTCAATATACTGACTCATGAGGTCTCCATTCATCCCAAGCAG 4183 Query 13760 TTTTACA-GGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAA 13818 | ||| || | | || ||| || | ||||| ||| || || || || Sbjct 4182 TGC-ACATGGCAGCGCGTCACATACAAACTCCCTCTCTATTACCACGGCATCGGCTACAA 4124 Query 13819 TAATTGTAATAATCTCATTAGAAGGAGGATATTTT-AGATGTTTAAAAATTAAACACGCA 13877 | |||| |||| | | | | || | | | | | | ||| || ||| Sbjct 4123 TTCCCCTAATTCTCTCCTC-GCTCAACTTCACCTTCAAAAGGCTGTAGAGTAAGCAGGCA 4065 Query 13878 AAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGC 13937 || ||||||||||| ||||| || || ||| | ||||| || || ||||| || ||| Sbjct 4064 AAGTCACAATGAAGACCCTCGTCCCTCGAAATCAACTCGTTCGAGAAGGTTAAACCGGGC 4005 Query 13938 ATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGAC-CCGGAAAAGAATATTCC 13996 | || || || |||||||||||||| |||| |||||| | ||||| || |||||||| Sbjct 4004 AATAAACCACGCTTTTTTAACCAAAAAATTG-AGCAAAAGCTTCCGGAGAAAAATATTCC 3946 Query 13997 CTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCA 14056 |||||| ||| || || | || || || | || ||| || || |||||| Sbjct 3945 CTCAACGCAAGCGAAAGCAACCAAACGCTCGGCGAAGGATTCTGAGCCGT---CTATCCA 3889 Query 14057 TTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAA 14116 || ||||| | | ||| |||| | || || || || || || | ||| | Sbjct 3888 TTGGAGGGCCCACTTGGCTTTCTTTTCCACGCAAGGGATGGTCTCGATTGCGTGAAAGAG 3829 Query 14117 ATATTCCTTCTCTTT--AGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCA 14174 | |||||| || | | ||| |||||| || || | || | |||||||| || Sbjct 3828 CCTGTGCTTCTCGTTGGAATCCTT--AATGTACGTCTCCAACAGGAGACTATACATCTCG 3771 Query 14175 GAGTGTATGTTTTCCATAGCTATCTGAAAACCATA-AAAGCATCTAGCTTCCGACCATTG 14233 ||||| || || || || ||||| ||||||||||| |||||| | || || || || Sbjct 3770 GAGTGAATATTCTCGATGGCTATTTGAAAACCATAGAAAGCA-CGGGCCTCGGAAACCTG 3712 Query 14234 TACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAA 14293 || ||| || | |||| | ||| || ||| || ||||| ||| ||||| Sbjct 3711 GACCTCCTTCATGAAACGACCGGCGAGATTCTCCAGAACAATGCCATCTGAAGCGGCAAA 3652 Query 14294 AAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGA 14353 || || | | || ||||||||| | | || || | | ||||||| ||| | ||| Sbjct 3651 GAAGGCAAGAACGTGAGTAATAAAGTGTCGTTCATCGGGGGTAAGTTTTTCCCACTGGGA 3592 Query 14354 TAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATA 14413 | ||| ||| ||||| ||||| || | ||||| || ||| |||| || || || Sbjct 3591 AACATCTACAGAGAGATCGACTTCCTCGGCAGTCCAGAAGGAAGCCTCAGCCTTCTTGTA 3532 Query 14414 CATTACCCATATTTC 14428 ||| |||| || || Sbjct 3531 CATCTCCCAAATCTC 3517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478397624307000