Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asclepias_20syriaca_20[genbank_20GCA_5F002018285.1_202017-03-03] 221,855 sequences; 236,770,010 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq34486 147 2e-30 >seq34486 Length=7597 Score = 147 bits (162), Expect = 2e-30 Identities = 553/854 (65%), Gaps = 15/854 (2%) Strand=Plus/Minus Query 13369 TTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTT 13428 || |||||||| | ||| || ||||| || || || || ||||| | || ||| Sbjct 4361 TTCTGATATTCTCCAACCCTCTTTTCGAAGAAATTGGTCTTACCCTGCAAACTGATAAGC 4302 Query 13429 TCCATAAAATCGAATGGATTTGTTGACATAA-ACACTTTATCACAACCTAGTTCTAATAA 13487 ||||| |||| || ||||| || ||||| ||| ||| || | || | || || Sbjct 4301 TCCATCCAATCAAAAGGATT-GTGGACATTGTACATTTTTCCATATCCCAAGGCTCCTAG 4243 Query 13488 TAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAG 13547 |||||| || |||| |||||||||||| ||| ||| | || | |||||| || | || Sbjct 4242 TAATCTGTCCGCAACAAACTCAATATACTGACTCATGAGGTCTCCATTCATCCCAAGCAG 4183 Query 13548 TTTTACA-GGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAA 13606 | ||| || | | | || ||| || | ||||| ||| || ||| || || Sbjct 4182 TGC-ACATGGCAGCGCGTCACATACAAACTCCCTCTCTATTACCACGGCATCGGCTACAA 4124 Query 13607 TAATCTTAATAATGTCATTAGAAGGAGGATATTTT-AGATGTTTAAAAATTAAACACGCA 13665 | | |||| | || | | | | || | | | | | | ||| || ||| Sbjct 4123 TTCCCCTAATTCTCTCCTC-GCTCAACTTCACCTTCAAAAGGCTGTAGAGTAAGCAGGCA 4065 Query 13666 AAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGC 13725 || ||||||||||| ||||| || || ||| | ||||| || || ||||| || ||| Sbjct 4064 AAGTCACAATGAAGACCCTCGTCCCTCGAAATCAACTCGTTCGAGAAGGTTAAACCGGGC 4005 Query 13726 ATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGAT-CCGGAAAAGAATATTCC 13784 | || || || |||||||||||||| |||| ||| || | | ||||| || |||||||| Sbjct 4004 AATAAACCACGCTTTTTTAACCAAAAAATTG-AGCAAAAGCTTCCGGAGAAAAATATTCC 3946 Query 13785 CTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCA 13844 |||||| ||| || || | | || || | || ||| || || |||||| Sbjct 3945 CTCAACGCAAGCGAAAGCAACCAAACGCTCGGCGAAGGATTCTGAGCCGT---CTATCCA 3889 Query 13845 TTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAA 13904 || ||||| | | ||| |||| | || || || |||||||| | || | Sbjct 3888 TTGGAGGGCCCACTTGGCTTTCTTTTCCACGCAAGGGATGGTCTCGATTGCGTGAAAGAG 3829 Query 13905 ATGTTCCTTCTCTTT--AGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCA 13962 | |||||| || | | ||| |||||| || || | || | |||||||| || Sbjct 3828 CCTGTGCTTCTCGTTGGAATCCTT--AATGTACGTCTCCAACAGGAGACTATACATCTCG 3771 Query 13963 GAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGT 14022 ||||| || || || || ||||| ||||||||||| ||| | || || || || Sbjct 3770 GAGTGAATATTCTCGATGGCTATTTGAAAACCATAGAAAGCACGGGCCTCGGAAACCTGG 3711 Query 14023 ACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAA 14082 |||||| || | | || | || || |||||| ||||| ||| ||||| Sbjct 3710 ACCTCCTTCATGAAACGACCGGCGAGATTCTCCAGAACAATGCCATCTGAAGCGGCAAAG 3651 Query 14083 AATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGCT 14142 || || | | || ||||||||| | | || || | | ||||||| ||| | || Sbjct 3650 AAGGCAAGAACGTGAGTAATAAAGTGTCGTTCATCGGGGGTAAGTTTTTCCCACTGGGAA 3591 Query 14143 AAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATAC 14202 | ||| ||| ||||| ||||| || | ||||| || ||| |||| || || ||| Sbjct 3590 ACATCTACAGAGAGATCGACTTCCTCGGCAGTCCAGAAGGAAGCCTCAGCCTTCTTGTAC 3531 Query 14203 ATTACCCATATTTC 14216 || |||| || || Sbjct 3530 ATCTCCCAAATCTC 3517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 477261583522200