Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asclepias_20syriaca_20[genbank_20GCA_5F002018285.1_202017-03-03] 221,855 sequences; 236,770,010 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq4370 104 2e-17 seq31911 87.8 1e-12 seq31910 86.0 5e-12 >seq4370 Length=4242 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | |||||| || | ||| |||||| || | |||||||||| | Sbjct 2536 CCACCACGGAGACGGAGCACCAAGTGAAGTGTGGACTCCTTCTGGATGTTGTAATCGGCC 2595 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||||| |||| |||| ||| || |||||||||||||| | ||| || || | || Sbjct 2596 AGGGTACGACCGTCTTCCAGTTGCTTACCGGCAAAAATCAACCTCTGCTGGTCTGGGGGA 2655 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGAC 43061 | ||||| || || |||| | || || || ||| ||||| | ||| ||| || Sbjct 2656 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTGTCAATCGTGTC-CGAGCTCTCCAC 2714 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | || ||||| || || || ||||| || ||||| ||||||||| Sbjct 2715 CTCCAAAGTAATAGTCTTGCCCGTGAGAGTCTTGACAAATATTTGCATT 2763 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | ||||||||| | |||| |||||| || | ||||| || | | Sbjct 2308 CCACCACGGAGACGAAGCACCAAATGAAGAGTGGACTCCTTCTGGATGTTGTAGTCAGCC 2367 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || || | || |||| ||| || |||||||||||||| | ||| || || | || Sbjct 2368 AGGGTGCGACCATCTTCCAGTTGCTTTCCGGCAAAAATCAACCTCTGCTGGTCTGGGGGA 2427 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGAC 43061 | ||||| || || ||| | || || || ||| ||||| ||| ||| || Sbjct 2428 ATGCCTTCCTTATCCTGGATTTTGGCCTTCACATTGTCAATGGTGTC-TGAGCTCTCCAC 2486 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || ||||| || ||||| || || ||||||||||||||||| Sbjct 2487 CTCCAAAGTGATAGTCTTACCGGTGAGGGTCTTCACAAAAATTTGCAT 2534 Score = 82.4 bits (90), Expect = 6e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| ||||| || || | |||||| || | ||| |||||| || | |||||||| | Sbjct 3219 GCCACCACGGAGCCTGAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAATCTGC 3278 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 | || || | || || | |||||| || || || ||||| | ||| ||||| | || Sbjct 3279 GAGGGTGCGGCCATCTTCAAGTTGTTTACCAGCGAAGATCAACCTCTGCTGATCTGGAGG 3338 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGA 43060 | |||||| || || |||| | || || | | | || || | ||| ||||| Sbjct 3339 AATACCTTCCTTATCTTGGATCTTTGCCTTAACATTATCGATGGTATC-CGAGCTCTCGA 3397 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || | || || ||||||||||| || ||||| || || |||||||| Sbjct 3398 CCTCGAGAGTAATGGTTTTTCCGGTGAGGGTTTTTACGAATATTTGCAT 3446 >seq31911 Length=2244 Score = 87.8 bits (96), Expect = 1e-12 Identities = 161/231 (70%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| ||||| || | | |||||| || | || ||||| || | ||||| || | Sbjct 594 GCCACCACGGAGACGAAGCACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCTGC 653 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 || || || | || |||| ||| ||||| ||||| ||||| | ||| || || | || Sbjct 654 CAGGGTGCGACCATCTTCCAGTTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCTGGGGG 713 Query 43002 CACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCG 43059 | |||||| || || ||| ||| | || || || ||| || || | ||| ||| Sbjct 714 AATACCTTCCTTGTC-CTGTATCTTGGCCTTCACATTGTCAATGGTATC-CGAGCTCTCC 771 Query 43060 ACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || |||| || || ||||| || ||||||||||||||||| || |||||| Sbjct 772 ACCTCTAATGTAATGGTTTTCCCAGTTAGAGTTTTCACAAATATCTGCATT 822 >seq31910 Length=2189 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | |||||| || | || ||||| || | ||||| || | | Sbjct 586 CCACCACGGAGACGAAGCACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCTGCC 645 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || || | || |||| ||| ||||| ||||| ||||| | ||| || |||| || Sbjct 646 AGGGTGCGACCATCTTCCAGTTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCGGGGGGA 705 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGAC 43061 | ||||| || || ||| |||| || | ||| || || | ||| ||| || Sbjct 706 ATGCCTTCCTTATCCTGGATTTTAGCTTTCACATTATCAATGGTATC-CGAGCTCTCCAC 764 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 |||| ||||| |||||||| || |||||||||||||| || |||||| Sbjct 765 CTCTAATGTTATGGTTTTTCCTGTGAGAGTTTTCACAAATATCTGCATT 813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380338430827590