Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asclepias_20syriaca_20[genbank_20GCA_5F002018285.1_202017-03-03] 221,855 sequences; 236,770,010 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq34486 185 1e-41 >seq34486 Length=7597 Score = 185 bits (204), Expect = 1e-41 Identities = 580/896 (65%), Gaps = 2/896 (0%) Strand=Plus/Minus Query 41774 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTT 41833 || || ||||| || || | |||||||| ||||| ||||| || | ||| ||| Sbjct 4361 TTCTGATATTCTCCAACCCTCTTTTCGAAGAAATTGGTCTTACCCTGCAAACTGATAAGC 4302 Query 41834 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 41893 ||||| ||||||| |||||| ||||| || |||||| | ||||||| | | Sbjct 4301 TCCATCCAATCAAAAGGATTGTGGACATTGTACATTTTTCCATATCCCAAGGCTCCTAGT 4242 Query 41894 AATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 41953 ||||| || || | || || ||||| |||| | || | |||||| || | ||| Sbjct 4241 AATCTGTCCGCAACAAACTCAATATACTGACTCATGAGGTCTCCATTCATCCCAAGCAGT 4182 Query 41954 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATA 42013 | ||| || || || | ||| || || || || || || | || ||| Sbjct 4181 GCACATGGCAGCGCGTCACATACAAACTCCCTCTCTATTACCACGGCATCGGCTACAATT 4122 Query 42014 GATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAA 42073 || | | | || || ||| | ||| | | | | || || || || Sbjct 4121 CCCCTAATTCTCTCCTCGCTCAACTTCACCTTCAAAAGGCTGTAGAGTAAGCAGGCAAAG 4062 Query 42074 TCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATT 42133 || || || |||||||| || || ||| || ||||| || || || | ||||||| | Sbjct 4061 TCACAATGAAGACCCTCGTCCCTCGAAATCAACTCGTTCGAGAAGGTTAAACCGGGCAAT 4002 Query 42134 AGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT-CCAGAAAAGAAGATTCCTTC 42192 | ||||||||||| | |||||| || || ||||| | | || || || || ||||| || Sbjct 4001 AAACCACGCTTTTTTAACCAAAAAATTGA-GCAAAAGCTTCCGGAGAAAAATATTCCCTC 3943 Query 42193 TACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTATCCACTTTTG 42252 || || || |||| | | ||| | | | | | | |||||| | | Sbjct 3942 AACGCAAGCGAAAGCAACCAAACGCTCGGCGAAGGATTCTGAGCCGTCTATCCATTGGAG 3883 Query 42253 AGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtt 42312 ||||| | ||| ||||||| || ||||| || || || || || | |||||| || Sbjct 3882 GGCCCACTTGGCTTTCTTTTCCACGCAAGGGATGGTCTCGATTGCGTGAAAGAGCCTGTG 3823 Query 42313 tttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAAT 42372 || || || ||| |||| || || || | || ||||||||||| || || ||||| Sbjct 3822 CTTCTCGTTGGAATCCTTAATGTACGTCTCCAACAGGAGACTATACATCTCGGAGTGAAT 3763 Query 42373 GTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGT 42432 || || ||||| || ||||| || |||||| | |||||||| |||||| || || | Sbjct 3762 ATTCTCGATGGCTATTTGAAAACCATAGAAAGCACGGGCCTCGGAAACCTGGACCTCCTT 3703 Query 42433 ACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAA 42492 || || | || | ||| || || || || || || ||||| || || | Sbjct 3702 CATGAAACGACCGGCGAGATTCTCCAGAACAATGCCATCTGAAGCGGCAAAGAAGGCAAG 3643 Query 42493 TACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATTGATATCTTT 42552 || || | ||||| | | ||| || || || | ||| | ||| | | |||| Sbjct 3642 AACGTGAGTAATAAAGTGTCGTTCATCGGGGGTAAGTTTTTCCCACTGGGAAACATCTAC 3583 Query 42553 AGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCA 42612 ||| | ||| ||||| || | ||||| || || || || ||||| || ||||| | ||| Sbjct 3582 AGAGAGATCGACTTCCTCGGCAGTCCAGAAGGAAGCCTCAGCCTTCTTGTACATCTCCCA 3523 Query 42613 GATATCATGATATTGAATTGGGAAAATAACAAATCTATTTGGATTTGGTGCAAGGA 42668 || ||| | ||||| |||||||| ||| ||||||| || ||||| || |||| Sbjct 3522 AATCTCAGGGTATTGGATTGGGAACATACAGAATCTATCAGGGTTTGGGGCCAGGA 3467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 669278005159800