Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asclepias_20syriaca_20[genbank_20GCA_5F002018285.1_202017-03-03] 221,855 sequences; 236,770,010 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq23310 91.5 1e-13 seq53181 87.8 2e-12 >seq23310 Length=1212 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 142970 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG 143029 |||| || ||||||| || ||||| || || || ||||| || | || ||| Sbjct 720 CGCAGCACCAAATGAAGAGTCGATTCCTTCTGGATATTGTAGTCAGCAAGGGTCCTCCCA 779 Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089 || || || || || |||||| | |||| ||||||||||| ||||| |||||||| ||| Sbjct 780 TCCTCAAGCTGCTTTCCAGCAAAAATCAAGCGTTGCTGATCTGGAGGAATGCCTTCCTTG 839 Query 143090 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACC 143149 || ||| || || | | || | ||||| | | || ||||| | ||| | Sbjct 840 TCCTGAATCTTGGTCTTGACATTATCAATGGTGTCTGAGCTCTCCACTTCCAAAGTGATG 899 Query 143150 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||||| || ||||| || || |||||||| ||||| Sbjct 900 GTCTTACCAGTCAAAGTCTTCACGAATATCTGCAT 934 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 142970 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG 143029 |||| |||||||||| || |||||||| || || ||||| || | || | | Sbjct 948 CGCAGCACTAAATGAAGAGTTGATTCTTTCTGGATATTGTAGTCAGCAAGGGTACGACCG 1007 Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089 || || |||||||||||||| | |||| | |||||||| || || || ||||| ||| Sbjct 1008 TCCTCCAGTTGTTTACCAGCGAAAATCAACCTCTGCTGATCTGGTGGGATACCTTCCTTG 1067 Query 143090 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACC 143149 || ||| ||| || | | || | ||||| | ||| || |||| ||| | Sbjct 1068 TCTTGAATCTTTGTCTTGACATTGTCAATGGTGTCTGAACTTTCCACCTCAAGAGTGATG 1127 Query 143150 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||||| ||||| || || || || || |||||||| Sbjct 1128 GTCTTCCCGGTTAAGGTCTTAACAAAGATTTGCAT 1162 >seq53181 Length=15488 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 142972 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTC 143031 |||||| | ||||| ||||| || || || |||||||| ||| || || || ||| Sbjct 5991 CAAAACAAGATGAAGGGTAGACTCCTTCTGAATGTTGTAGTCGGCCAAAGTTCTGCCGTC 6050 Query 143032 TTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 143091 ||| | || ||||| || |||||| || |||||||| ||||| || ||||| || || Sbjct 6051 TTCCAACTGCTTACCGGCGAAGATCAAGCGCTGCTGATCAGGAGGAATTCCTTCCTTATC 6110 Query 143092 GGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGT 143151 ||| || || | | || | || || | ||| ||||| | || | ||| Sbjct 6111 CTGAATCTTAGCCTTAACGTTGTCGATAGTATCAGAACTTTCGACTTCCAAGGTGATCGT 6170 Query 143152 CTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||| ||||| | ||||| || ||||||||||| Sbjct 6171 CTTACCGGTGAGGGTTTTGACAAATATTTGCAT 6203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505608354003600