Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asclepias_20syriaca_20[genbank_20GCA_5F002018285.1_202017-03-03] 221,855 sequences; 236,770,010 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq53181 105 6e-18 >seq53181 Length=15488 Score = 105 bits (116), Expect = 6e-18 Identities = 144/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 || |||||||| |||||||| ||||| || | ||| | ||||||| ||||||||||| Sbjct 6463 GTGGACTCCTTCTGAATATTATAATCGGCAAGTGTACGGCCGTCCTCAAGCTGTTTACCG 6522 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| | || || | |||||||||| || | ||| || ||||| || || || Sbjct 6523 GCAAATATGAGACGCTGCTGATCCGGAGGGATGCCTTCCTTGTCTTGGATCTTAGTCTTG 6582 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | ||| |||||| | ||| ||||| ||||| || ||||| |||| ||| Sbjct 6583 ACATTATCGATGGTATCGGAACTCTCGACTTCGAGAGTAATTGTCTTACCGGTTAGGGTT 6642 Query 19025 TTGACAAAAATTTGCATTTTA 19045 |||||||| || ||||| ||| Sbjct 6643 TTGACAAAGATCTGCATCTTA 6663 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || || || | ||| || || | || || ||||||||||| || ||||| ||||| ||| Sbjct 5749 CCACCGCGAAGCCTCAAGACGAGATGTAAGGTAGACTCCTTCTGGATATTATAATCGGCC 5808 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| | |||| |||| ||| || || ||| | || || | ||||||||| || Sbjct 5809 AAGGTTCTCCCGTCTTCCAACTGCTTCCCGGCAAAGATCAGGCGCTGCTGATCAGGAGGG 5868 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | || || ||||| ||| || || || | | ||| ||||| | ||| | Sbjct 5869 ATCCCTTCCTTGTCCTGAATCTTAGCCTTAACGTTGTCGATTGTATCAGAACTCTCGACT 5928 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | |||||| || |||||||| | |||||||||||| |||||||| Sbjct 5929 TCCAAGGTAATAGTCTTACCTGTGAGAGTTTTGACAAATATTTGCAT 5975 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 ||||||||||| |||||||||||||| |||| ||| || |||| |||| || ||||| Sbjct 6235 GTAGACTCCTTCTGAATATTGTAATCGGCCAACGTTCTGCCGTCTTCCAATTGCTTACCG 6294 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 || | ||||||||||||||||| || | ||||| ||||| ||| ||| || Sbjct 6295 GCGAAGATAAGTCTCTGCTGATCAGGAGGAATTCCCTCCTTGTCCTGAATCTTCGCCTTA 6354 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | | ||| ||||| | ||| |||| || || || ||||| |||| ||| Sbjct 6355 ACGTTGTCGATGGTATCTGAACTCTCGACCTCGAGAGTGATCGTCTTACCGGTTAGGGTT 6414 Query 19025 TTGACAAAAATTTGCAT 19041 || || || || ||||| Sbjct 6415 TTAACGAAGATCTGCAT 6431 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | || ||||||||||| || || ||||| |||| |||| ||||||| Sbjct 5538 CACCAGGTGAAGGGTGGACTCCTTTTGTATGTTATAATCGGCCAATGTTCGTCCGTCCTC 5597 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 || ||||| || ||| ||||||||||||| || ||| ||| | || || || || Sbjct 5598 CAATTGTTTTCCAGCAAAAATAAGTCTCTGTTGGTCCGGGGGAATCCCTTCCTTATCTTG 5657 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 |||||| || || | ||| ||||| | || || | ||||| || || Sbjct 5658 AATTTTTGCCTTGACGTTATCGATGGTATCAGAACTTTCAACCTCAAGAGTAATCGTCTT 5717 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 |||||| | |||||| ||||| |||||||| Sbjct 5718 ACCTGTGAGAGTTTTAACAAATATTTGCAT 5747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 413451854095870