Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asclepias_20syriaca_20[genbank_20GCA_5F002018285.1_202017-03-03] 221,855 sequences; 236,770,010 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq53181 100 2e-16 seq31911 87.8 1e-12 seq23310 86.0 4e-12 seq4370 82.4 5e-11 >seq53181 Length=15488 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||| | | | ||||| || || ||| ||| ||||| || ||||||||| Sbjct 5520 ACCACCTCTGAGACGCAGCACCAGGTGAAGGGTGGACTCCTTTTGTATGTTATAATCGGC 5579 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 ||| || | || |||||||||||||| ||||| || | | || |||||| | || Sbjct 5580 CAATGTTCGTCCGTCCTCCAATTGTTTTCCAGCAAAAATAAGTCTCTGTTGGTCCGGGGG 5639 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||||| |||||| ||||||| ||||| || | | ||||| | || || Sbjct 5640 AATCCCTTCCTTATCTTGAATTTTTGCCTTGACGTTATCGATGGTATCAGAACTTTCAAC 5699 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | ||||| || ||||| || | ||| || |||||||||||||| Sbjct 5700 CTCAAGAGTAATCGTCTTACCTGTGAGAGTTTTAACAAATATTTGCAT 5747 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 43918 ATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTG 43977 ||| || ||| ||| || ||||||||||||||| | | ||| | || || | || Sbjct 6456 ATGGAGGGTGGACTCCTTCTGAATATTATAATCGGCAAGTGTACGGCCGTCCTCAAGCTG 6515 Query 43978 TTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTT 44037 ||| || |||||||| | || ||||| ||| |||| | ||||| || ||| || || Sbjct 6516 TTTACCGGCAAATATGAGACGCTGCTGATCCGGAGGGATGCCTTCCTTGTCTTGGATCTT 6575 Query 44038 TTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGT 44097 ||||| || | | ||||| | ||| || |||| |||||||| |||||||| Sbjct 6576 AGTCTTGACATTATCGATGGTATCGGAACTCTCGACTTCGAGAGTAATTGTCTTACCGGT 6635 Query 44098 TAAAGTCTTCACAAATATTTGCAT 44121 || || || ||||| || ||||| Sbjct 6636 TAGGGTTTTGACAAAGATCTGCAT 6659 >seq31911 Length=2244 Score = 87.8 bits (96), Expect = 1e-12 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 ||||| |||||||| | |||||||| || || ||||| ||||| || || || | Sbjct 823 CCTCCCCTCAATCTAAGGACCAAATGAAGGGTTGATTCTTTCTGAATGTTGTAGTC-TGC 881 Query 43955 AATTGACGCTC-ATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || | | || ||| || | || ||||| ||||| ||||||| |||||||| ||||| Sbjct 882 AAGGGTCCGTCCATCTTCAAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTC-TGAGG 940 Query 44014 TAC-ACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCA 44072 | |||||| ||||| || || || || | ||| ||||| | ||||| Sbjct 941 GAATACCTTCCTTATCCTGTATCTTGGCCTTTACATTGTCAATGGTATCCGAGCTCTCCA 1000 Query 44073 CATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | || | || || ||||| ||||| | ||| ||||||||||| ||||| Sbjct 1001 CCTCTAGTGTTATGGTTTTTCCGGTGAGAGTTTTCACAAATATCTGCAT 1049 >seq23310 Length=1212 Score = 86.0 bits (94), Expect = 4e-12 Identities = 117/160 (73%), Gaps = 4/160 (3%) Strand=Plus/Plus Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024 |||| || | || ||||| ||||| ||||| |||||||| || |||| | ||||| | Sbjct 778 CATCCTCAAGCTGCTTTCCAGCAAAAATCAAGCGTTGCTGATCTGGAGGAATGCCTTCCT 837 Query 44025 TATC-TGAAATTTTTTGT-TTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGT 44082 | || |||| | || || ||||| || ||| || |||| |||||| || | || Sbjct 838 TGTCCTGAA--TCTTGGTCTTGACATTATCAATGGTGTCTGAGCTCTCCACTTCCAAAGT 895 Query 44083 AATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 || || ||||| || ||||||||||| ||||| |||||| Sbjct 896 GATGGTCTTACCAGTCAAAGTCTTCACGAATATCTGCATG 935 >seq4370 Length=4242 Score = 82.4 bits (90), Expect = 5e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTC 43971 ||||||||| || ||| ||| || || || || || || | || |||| || Sbjct 2325 CACCAAATGAAGAGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGACCATCTTC 2384 Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGA 44031 || ||| ||||| ||||| ||||||| |||||||| | || | ||||| ||||| Sbjct 2385 CAGTTGCTTTCCGGCAAAAATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTATCCTG 2444 Query 44032 AATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTT 44091 ||||| || || | ||| || |||| |||||| || | || || || || Sbjct 2445 GATTTTGGCCTTCACATTGTCAATGGTGTCTGAGCTCTCCACCTCCAAAGTGATAGTCTT 2504 Query 44092 ACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 |||||| | ||||||||||| |||||||| Sbjct 2505 ACCGGTGAGGGTCTTCACAAAAATTTGCAT 2534 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 ||||| |||| ||| | ||||| || || ||| || ||||| || || || ||| Sbjct 2764 CCTCCCCTCAGTCTGAGGACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCGGCA 2823 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 | ||| |||| || | || ||||||||||| ||||||| ||||||||| | || Sbjct 2824 AGGGTCCGCCCATCTTCGAGCTGCTTTCCTGCAAAGATCAACCTTTGCTGGTCTGGTGGA 2883 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | || || ||||| ||||| ||| || || | | ||||||| |||||| Sbjct 2884 ATTCCCTCCTTATCCTGGATTTTAGCTTTCACGTTATCGATGGTATCTGAGCTCTCCACC 2943 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 || | || || || || || || | |||||| || || || |||||| Sbjct 2944 TCCAAAGTGATGGTCTTCCCCGTGAGAGTCTTGACGAAGATCTGCATG 2991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 353818331814540