Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asclepias_20syriaca_20[genbank_20GCA_5F002018285.1_202017-03-03] 221,855 sequences; 236,770,010 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq4542 98.7 8e-16 seq4370 82.4 6e-11 >seq4542 Length=2509 Score = 98.7 bits (108), Expect = 8e-16 Identities = 110/146 (75%), Gaps = 1/146 (1%) Strand=Plus/Plus Query 19971 TTTATCATT-TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATG 20029 ||||||||| ||||||||| | |||||| ||||| || || || |||||||| || ||| Sbjct 2107 TTTATCATTGTTCCTCCTCTAAGCCTCAAAACCAAGTGAAGGGTTGATTCTTTCTGGATG 2166 Query 20030 TTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGT 20089 || || || | | ||| |||||||||||| || || ||| ||||||| ||||| Sbjct 2167 TTATAGTCAGCTAAAGTACGGCCATCTTCCAATTGCTTACCAGCAAAAATAAGTCTCTGC 2226 Query 20090 TGATCGACGGGCACGCCTTCTTTGTC 20115 ||||| || | ||||||||||| Sbjct 2227 TGATCAGGAGGAATACCTTCTTTGTC 2252 >seq4370 Length=4242 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/212 (69%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 19999 CACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTC 20058 |||||| || ||||| || || || || |||||||||||| ||| || | ||||| Sbjct 2553 CACCAAGTGAAGTGTGGACTCCTTCTGGATGTTGTAATCGGCCAGGGTACGACCGTCTTC 2612 Query 20059 CAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGC 20118 || ||| || || ||| |||| | |||||| || || ||| | |||||| || || Sbjct 2613 CAGTTGCTTACCGGCAAAAATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTATCCTG 2672 Query 20119 AATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGT-TCCGTTTCCACGGTAATGGTTT 20177 || || ||||| | | ||| | || | || | ||| |||| ||||| || | Sbjct 2673 GATCTTGGCCTTCACGTTGTCAATCGTGTC-CGAGCTCTCCACCTCCAAAGTAATAGTCT 2731 Query 20178 TGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 |||| || | || |||||||| ||||||||| Sbjct 2732 TGCCCGTGAGAGTCTTGACAAATATTTGCATT 2763 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418452695871255