Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asclepias_20syriaca_20[genbank_20GCA_5F002018285.1_202017-03-03] 221,855 sequences; 236,770,010 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq42083 109 5e-19 seq53181 104 2e-17 seq31911 98.7 8e-16 seq31910 93.3 4e-14 seq4370 91.5 1e-13 >seq42083 Length=68989 Score = 109 bits (120), Expect = 5e-19 Identities = 165/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| |||||||| | ||||| | ||| | || |||||| || ||||| |||||||| Sbjct 15133 ACCACCGCGCAAGCGCAACACCAGATGCAAGGTTGACTCCTTCTGGATGTTATAATCAGC 15192 Query 48559 CAATTGTCGCT--CGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACC 48616 | ||| || ||||||| |||||||| ||| || | || | ||||||||||| | Sbjct 15193 TAGG-GTC-CTGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGATCTGGC 15250 Query 48617 GGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCC 48676 || | | ||||| ||| || || ||||| | | |||||||||| ||||| Sbjct 15251 GGGATGCCCTCCTTATCCTGTATCTTAGCCTTGACATTGTCAATGGTATCGGAGGACTCA 15310 Query 48677 GTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 ||| | || ||||| |||||||| || |||||||| || ||||||||| Sbjct 15311 ACCTCCAAAGTAATGGTCTTACCGGTTAGGGTTTTCACGAAGATCTGCATC 15361 >seq53181 Length=15488 Score = 104 bits (114), Expect = 2e-17 Identities = 148/206 (72%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCT 48581 ||| || ||| |||||| ||||| || ||||| || || ||| || ||||||| |||| Sbjct 6456 ATGGAGGGTGGACTCCTTCTGAATATTATAATCGGC-AAGTGTACGGCCGTCCTCAAGCT 6514 Query 48582 GCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTT 48641 | |||||| | | || | ||||||||||||| || | | ||||||||| || | Sbjct 6515 GTTTACCGGCAAATATGAGACGCTGCTGATCCGGAGGGATGCCTTCCTTGTCTTGGATCT 6574 Query 48642 TCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701 | ||||| | | |||||||||| | ||| |||| || || || ||||||| Sbjct 6575 TAGTCTTGACATTATCGATGGTATCGGAACTCTCGACTTCGAGAGTAATTGTCTTACCGG 6634 Query 48702 TGAGAGTTTTCACAAAAATCTGCATC 48727 | || ||||| ||||| ||||||||| Sbjct 6635 TTAGGGTTTTGACAAAGATCTGCATC 6660 Score = 98.7 bits (108), Expect = 8e-16 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 || ||||| | ||| || || | |||||| || |||||| ||||||||||| || ||| Sbjct 5977 CCACCGCGGAGCCTCAAAACAAGATGAAGGGTAGACTCCTTCTGAATGTTGTAGTCGGCC 6036 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 || || |||| |||| |||||||||| || | || || ||||||||||| || Sbjct 6037 AAAGTTCTGCCGTCTTCCAACTGCTTACCGGCGAAGATCAAGCGCTGCTGATCAGGAGGA 6096 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCG 48677 | | |||||| ||| ||| || ||| | | | || || ||||| | | || Sbjct 6097 ATTCCTTCCTTATCCTGAATCTTAGCCTTAACGTTGTCG--ATAGTATCAGAACTTTCGA 6154 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 || | || || || ||||||||||| ||||| ||||| || |||||| Sbjct 6155 CTTCCAAGGTGATCGTCTTACCGGTGAGGGTTTTGACAAATATTTGCATC 6204 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTG 48582 || |||||| |||||| |||||||||||||||| ||| || ||| | ||||| || || Sbjct 5317 TGGAGTGTGGACTCCTTCTGAATGTTGTAATCAG-CAAGGGTGCGCCCATCCTCTAGTTG 5375 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| || | |||| | | |||||||||| || | | ||||||||| ||| || Sbjct 5376 CTTCCCAGCAAAAATGAGCCTCTGCTGATCCGGGGGAATCCCCTCCTTGTCCTGAATCTT 5435 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||| | | ||||||| || | ||| || | ||| ||||| || || || Sbjct 5436 GGACTTCACATTATCTATGGTGTCTGAGCTCTCTACTTCAAGTGTAATGGTCTTCCCAGT 5495 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 | || ||||||||||||||||| Sbjct 5496 CAATGTCTTCACAAAAATCTGCAT 5519 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 ||||| ||| ||||||||| ||||| ||||| |||||| ||| ||||||||| || Sbjct 5545 TGAAGGGTGGACTCCTTTTGTATGTTATAATCGGCCAATGTTCGTCCGTCCTCCAATTGT 5604 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || || | |||| | | ||| || ||| || | | |||||| || |||||| Sbjct 5605 TTTCCAGCAAAAATAAGTCTCTGTTGGTCCGGGGGAATCCCTTCCTTATCTTGAATTTTT 5664 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||||| | |||||||| | | || ||| | || || || ||||| ||| Sbjct 5665 GCCTTGACGTTATCGATGGTATCAGAACTTTCAACCTCAAGAGTAATCGTCTTACCTGTG 5724 Query 48704 AGAGTTTTCACAAAAATCTGCATC 48727 |||||||| ||||| || |||||| Sbjct 5725 AGAGTTTTAACAAATATTTGCATC 5748 >seq31911 Length=2244 Score = 98.7 bits (108), Expect = 8e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 ||||| | ||| || | || |||||||| || || || ||||||||||| || | | Sbjct 823 CCTCCCCTCAATCTAAGGACCAAATGAAGGGTTGATTCTTTCTGAATGTTGTAGTCTG-C 881 Query 48560 AATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 || || || | || || |||||||| || | | || || | |||||| || || Sbjct 882 AAGGGTCCGTCCATCTTCAAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCTGAGGG 941 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | || |||||| ||| || || ||| | | | |||||||| | |||| Sbjct 942 AATACCTTCCTTATCCTGTATCTTGGCCTTTACATTGTCAATGGTATCCGAGCTCTCCAC 1001 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | |||||||||||| |||||||||||||||||||| |||||||| Sbjct 1002 CTCTAGTGTTATGGTTTTTCCGGTGAGAGTTTTCACAAATATCTGCAT 1049 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCT--CGTCCTCCAGCT 48581 ||||| ||| ||||| || |||||||| ||||||| | ||| || | ||||||| | Sbjct 391 TGAAGGGTGGATTCCTTCTGGATGTTGTAGTCAGCCAGT-GTC-CTGCCATCCTCCAATT 448 Query 48582 GCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTT 48641 |||||||| | | || || | |||||| || || | | ||||||||| || | Sbjct 449 GCTTACCGGCAAATATCAACCTCTGCTGGTCAGGGGGAATTCCCTCCTTGTCCTGTATCT 508 Query 48642 TCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701 | ||| | | | |||||||| | |||| ||| | ||||||||| || || | Sbjct 509 TAGTCTTTACATTATCAATGGTATCCGAGCTCTCCACCTCCAATGTTATGGTCTTCCCAG 568 Query 48702 TGAGAGTTTTCACAAAAATCTGCAT 48726 |||||||||| |||||||| ||||| Sbjct 569 TGAGAGTTTTAACAAAAATTTGCAT 593 Score = 87.8 bits (96), Expect = 2e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| || ||||| || ||||| || |||||||||||||| | ||| | || || Sbjct 1296 CACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAATCAGCGAGGGTACGCCCATCTTC 1355 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 ||||||||||| | | || || | |||||| || || | | ||||||||| Sbjct 1356 AAGCTGCTTACCAGCAAAGATCAATCTCTGCTGGTCTGGGGGGATCCCTTCCTTGTCTTG 1415 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 || ||| ||| | | |||| ||||| | ||| ||||| || || ||||| Sbjct 1416 GATCTTCGCCTTAACATTGTCTATCGTATCAGAGCTCTCGACCTCGAGAGTAATTGTTTT 1475 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 |||||||| |||||||| |||||||||||| Sbjct 1476 TCCGGTGAGGGTTTTCACGAAAATCTGCATC 1506 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 ||||| | ||| || | || |||||||| || || || ||||||||||| || | | Sbjct 1051 CCTCCCCTCAATCTAAGGACCAAATGAAGGGTTGATTCTTTCTGAATGTTGTAGTCTG-C 1109 Query 48560 AATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 || || || | || || |||||||| || | | || || | |||||| || || Sbjct 1110 AAGGGTCCGTCCATCTTCAAGCTGCTTTCCAGCAAAGATCAATCTCTGCTGGTCTGGGGG 1169 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | || |||||| ||| || || ||| | | | |||||||| | |||| Sbjct 1170 AATACCTTCCTTATCCTGTATCTTGGCCTTAACATTGTCAATGGTATCCGAGCTCTCCAC 1229 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | ||||||||| || |||||||| |||||||| ||||| ||||| Sbjct 1230 CTCCAATGTTATGGTCTTCCCGGTGAGGGTTTTCACGAAAATTTGCAT 1277 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| || ||||| || ||||| || |||||||| || |||| || | || || Sbjct 612 CACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCTGCCAGGGTGCGACCATCTTC 671 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 ||| ||||| || | | || || | |||||| || || | || |||||||||| Sbjct 672 CAGTTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCTGGGGGAATACCTTCCTTGTCCTG 731 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 || || ||| | | | |||||||| | |||| ||| | ||| |||||||| Sbjct 732 TATCTTGGCCTTCACATTGTCAATGGTATCCGAGCTCTCCACCTCTAATGTAATGGTTTT 791 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || || |||||||||||||| |||||||| Sbjct 792 CCCAGTTAGAGTTTTCACAAATATCTGCAT 821 >seq31910 Length=2189 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 ||||| | ||| || | || || ||||| || ||||| ||||||||||| || | | Sbjct 1042 CCTCCCCTCAATCTAAGAACCAAGTGAAGGGTTGATTCCTTCTGAATGTTGTAGTCTG-C 1100 Query 48560 AATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 || || || | || || |||||||| || | | || || | |||||| || || Sbjct 1101 AAGAGTCCGTCCATCTTCAAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGGGG 1160 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | || |||||||||| ||| || ||| | | | |||||||| | |||| Sbjct 1161 AATACCTTCCTTGTCCTGAATCTTGGCCTTCACATTGTCAATGGTATCCGAGCTCTCCAC 1220 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | ||||||||| || |||||||| |||||||| ||||| ||||| Sbjct 1221 CTCCAATGTTATGGTCTTCCCGGTGAGGGTTTTCACGAAAATTTGCAT 1268 Score = 87.8 bits (96), Expect = 2e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| || ||||| || ||||| || |||||||||||||| | || | || || Sbjct 1287 CACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAATCAGCGAGGGTACGGCCATCTTC 1346 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 ||||||||||| | | || || | |||||| || || | | ||||||||| Sbjct 1347 AAGCTGCTTACCAGCAAAGATCAACCTCTGCTGGTCTGGGGGAATCCCTTCCTTGTCTTG 1406 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 || ||| ||| | | |||| ||||| | ||| ||||| || || ||||| Sbjct 1407 GATCTTCGCCTTAACATTGTCTATCGTATCAGAGCTCTCGACCTCGAGAGTAATTGTTTT 1466 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 |||||||| ||||||||||||||||||||| Sbjct 1467 TCCGGTGAGGGTTTTCACAAAAATCTGCATC 1497 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 ||||| | ||| || | || || ||||| || ||||| ||||||||||| || | | Sbjct 814 CCTCCCCTCAATCTAAGGACCAAGTGAAGAGTTGATTCCTTCTGAATGTTGTAGTCTG-C 872 Query 48560 AATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 || || || | || || |||||||| || | | || || | |||||| || || Sbjct 873 AAGGGTCCGTCCATCTTCAAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGGGG 932 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | |||||| ||| ||| || ||| | | | || ||||| | |||| Sbjct 933 AATGCCTTCCTTATCCTGAATCTTGGCCTTCACATTGTCAATTGTATCCGAGCTCTCCAC 992 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | ||||| |||||| || ||||||||||||||||| |||||||| Sbjct 993 CTCTAGTGTTACGGTTTTCCCAGTGAGAGTTTTCACAAATATCTGCAT 1040 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| || ||||| || ||||| || |||||||| || |||| || | || || Sbjct 603 CACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCTGCCAGGGTGCGACCATCTTC 662 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 ||| ||||| || | | || || | |||||| || || | | |||||| ||| Sbjct 663 CAGTTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCGGGGGGAATGCCTTCCTTATCCTG 722 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 ||||| || | | | |||||||| | |||| ||| | |||||||||||| Sbjct 723 GATTTTAGCTTTCACATTATCAATGGTATCCGAGCTCTCCACCTCTAATGTTATGGTTTT 782 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || ||||||||||||||||| |||||||| Sbjct 783 TCCTGTGAGAGTTTTCACAAATATCTGCAT 812 >seq4370 Length=4242 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| |||||||| ||| |||||| || |||||||| ||||||| || | || || Sbjct 2325 CACCAAATGAAGAGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGACCATCTTC 2384 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 ||| ||||| ||| | |||| || | |||||| || || | | |||||| ||| Sbjct 2385 CAGTTGCTTTCCGGCAAAAATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTATCCTG 2444 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 ||||| ||| | | | ||||| || | |||| ||| | || || || || Sbjct 2445 GATTTTGGCCTTCACATTGTCAATGGTGTCTGAGCTCTCCACCTCCAAAGTGATAGTCTT 2504 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||||||| || ||||||||||| ||||| Sbjct 2505 ACCGGTGAGGGTCTTCACAAAAATTTGCAT 2534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420112196651855