Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asclepias_20syriaca_20[genbank_20GCA_5F002018285.1_202017-03-03] 221,855 sequences; 236,770,010 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq21565 114 7e-21 seq48447 109 3e-19 seq30088 104 1e-17 seq128920 100 1e-16 seq14676 98.7 5e-16 seq42653 95.1 6e-15 seq34627 93.3 2e-14 seq42250 91.5 8e-14 >seq21565 Length=48967 Score = 114 bits (126), Expect = 7e-21 Identities = 79/89 (89%), Gaps = 1/89 (1%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 |||| |||| || ||||||||||| | | | |||||| ||||||||||||||||||||| Sbjct 6756 AATATAAAA-CACATTGGCCCATGCAGGTCTAGAACCTGCGACCTTCGCGTTATTAGCAC 6698 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||||||||||||||||||| Sbjct 6697 GACGCTCTAACCAACTGAGCTAATGGGCC 6669 >seq48447 Length=2128 Score = 109 bits (120), Expect = 3e-19 Identities = 82/96 (85%), Gaps = 2/96 (2%) Strand=Plus/Plus Query 11434 TAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTA 11493 || || ||| | ||||| |||||||||||| | | |||||||| |||||||||||||| Sbjct 472 TAAAAATAAAATAAAAT--AATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTA 529 Query 11494 TTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||| |||| |||||||||| |||| Sbjct 530 TTAGCACGACGCTCTAACCATCTGAGCTAATAGGCC 565 Score = 109 bits (120), Expect = 3e-19 Identities = 80/93 (86%), Gaps = 2/93 (2%) Strand=Plus/Plus Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 ||| || |||||| |||||||||||| | | |||||||| ||||||||||||||||| Sbjct 1747 AATAAAATAAAAAT--AATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTA 1804 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||| |||| |||||||||| |||| Sbjct 1805 GCACGACGCTCTAACCATCTGAGCTAATAGGCC 1837 Score = 104 bits (114), Expect = 1e-17 Identities = 76/88 (86%), Gaps = 2/88 (2%) Strand=Plus/Plus Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 ||| || |||||| ||||||| |||| | | |||||||| ||||||||||||||||| Sbjct 774 AATAAAATAAAAAT--AATTGGCTCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTA 831 Query 11497 GCACGACGCTCTRACCAACTGAGCTAAT 11524 |||||||||||| ||||||||||||||| Sbjct 832 GCACGACGCTCTAACCAACTGAGCTAAT 859 Score = 100 bits (110), Expect = 1e-16 Identities = 75/88 (85%), Gaps = 2/88 (2%) Strand=Plus/Plus Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 ||| || |||||| ||||||| || | | | |||||||| ||||||||||||||||| Sbjct 995 AATAAACTAAAAAT--AATTGGCTCAAGTAGGTCTCGAACCTGCGACCTTCGCGTTATTA 1052 Query 11497 GCACGACGCTCTRACCAACTGAGCTAAT 11524 |||||||||||| ||||||||||||||| Sbjct 1053 GCACGACGCTCTAACCAACTGAGCTAAT 1080 Score = 95.1 bits (104), Expect = 6e-15 Identities = 77/93 (83%), Gaps = 2/93 (2%) Strand=Plus/Plus Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 ||| || |||||| |||||||||||| | | |||||||| | ||||||||||||||| Sbjct 1433 AATGAAATAAAAAT--AATTGGCCCATGCAGGTCTCGAACCTCCAACCTTCGCGTTATTA 1490 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 || ||||||||| |||| || ||||||| |||| Sbjct 1491 GCCCGACGCTCTAACCATCTTAGCTAATAGGCC 1523 Score = 89.7 bits (98), Expect = 3e-13 Identities = 71/85 (84%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||||| ||||||||||| | | |||||||| |||||||||| |||||||||||||| Sbjct 1221 AAAAAT--AATTGGCCCATACAGGTCTCGAACCTACGACCTTCGCATTATTAGCACGACG 1278 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 ||| | ||| ||||||||| |||| Sbjct 1279 CTCAAATCAAGTGAGCTAATTGGCC 1303 >seq30088 Length=10220 Score = 104 bits (114), Expect = 1e-17 Identities = 76/89 (85%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || |||||| ||| |||||| || | | |||||||| |||||||||||||||||||| Sbjct 8527 AAAAAAAAAACAATTTGGCCTATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCAC 8468 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| ||||||||||||||| |||| Sbjct 8467 GACGCTCTAACCAACTGAGCTAATAGGCC 8439 >seq128920 Length=893 Score = 100 bits (110), Expect = 1e-16 Identities = 74/86 (86%), Gaps = 2/86 (2%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||| | ||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 772 AAAAAATATA--TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 829 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||| |||||||||| |||| Sbjct 830 GCTCTAACCAGCTGAGCTAATAGGCC 855 >seq14676 Length=1328 Score = 98.7 bits (108), Expect = 5e-16 Identities = 73/85 (86%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||||| |||||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 141 AAAAAT--AATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACA 84 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| |||| || ||||||| |||| Sbjct 83 CTCTAACCATCTAAGCTAATAGGCC 59 >seq42653 Length=56051 Score = 95.1 bits (104), Expect = 6e-15 Identities = 74/89 (83%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||| | ||||| || | | |||||||| ||||||||||||||||||||||| Sbjct 26771 AAAAAATAATTATGGCCTATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGAC 26830 Query 11504 GCTCTRACCAACTGAGCTAATGGGCCGTC 11532 ||||| ||||||||||||||| |||| || Sbjct 26831 GCTCTAACCAACTGAGCTAATAGGCCATC 26859 Score = 93.3 bits (102), Expect = 2e-14 Identities = 74/89 (83%), Gaps = 2/89 (2%) Strand=Plus/Plus Query 11446 AAAATCAAATT--GGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||| |||| |||| || | | |||||||| ||||||||||||||||||||||| Sbjct 26466 AAAATATAATTATGGCCTATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGAC 26525 Query 11504 GCTCTRACCAACTGAGCTAATGGGCCGTC 11532 ||||| ||||||||||||||| |||| || Sbjct 26526 GCTCTAACCAACTGAGCTAATAGGCCATC 26554 >seq34627 Length=1101 Score = 93.3 bits (102), Expect = 2e-14 Identities = 75/90 (83%), Gaps = 1/90 (1%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 ||| ||||| || || ||||||||| | | || ||||| ||||| |||||||||||||| Sbjct 982 AATGAAAAAACATATATGGCCCATGCAGGTCTCCAACCTGCGACCGTCGCGTTATTAGCA 1041 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||| || | |||||||||| |||| Sbjct 1042 CGACGCTCTAACTAGCTGAGCTAATAGGCC 1071 >seq42250 Length=33142 Score = 91.5 bits (100), Expect = 8e-14 Identities = 78/95 (82%), Gaps = 4/95 (4%) Strand=Plus/Minus Query 11426 GGGAAATATAGAATTAATAAAAAATCAA--ATTGGCCCATGAAAGGATCGAACCTTCGAC 11483 || ||| || ||| ||||||||| | ||||||||||| | | |||||||| |||| Sbjct 14193 GGTAAAAATGGAA--AATAAAAAAATATTTATTGGCCCATGCAGGTCTCGAACCTGCGAC 14136 Query 11484 CTTCGCGTTATTAGCACGACGCTCTRACCAACTGA 11518 ||||||||||||||||||||||||| |||| |||| Sbjct 14135 CTTCGCGTTATTAGCACGACGCTCTAACCAGCTGA 14101 Lambda K H 0.638 0.409 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 260784164975980