Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asclepias_20syriaca_20[genbank_20GCA_5F002018285.1_202017-03-03] 221,855 sequences; 236,770,010 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq42089 159 5e-35 seq25332 147 3e-31 seq52271 140 5e-29 seq9161 134 2e-27 seq126503 125 1e-24 seq1376 109 9e-20 >seq42089 Length=13946 Score = 159 bits (176), Expect = 5e-35 Identities = 196/268 (73%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| || | ||| | ||||||||||| || ||||| ||||| |||||| Sbjct 9726 GCCAAGCGTCACCGTAAGGTTCTGAGGGATAACATCCAGGGTATCACTAAGCCGGCTATC 9785 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 | |||||||||||| | ||||||||||||||| | ||| | ||||||| || | | Sbjct 9786 AGGCGTCTGGCTCGTAGAGGTGGAGTCAAGCGTATTAGTGGTCTTATCTATGAGGAAACT 9845 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| | || ||||| || ||| || || | ||||||| || ||||| ||| Sbjct 9846 CGAGGCGTTCTTAAAATCTTTCTGGAGAATGTGATTCGTGATGCTGTCACATATACTGAG 9905 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 |||||| |||||||| || || | |||||| |||| ||||| ||||| | || || Sbjct 9906 CACGCTCGCCGTAAGACGGTAACTGCTATGGATGTCGTTTATGCTTTGAAGAGGCAGGGA 9965 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAAT 16700 |||| |||| || ||||| ||| || Sbjct 9966 CGTACCCTTTACGGGTTTGGTGGTTGAT 9993 >seq25332 Length=18292 Score = 147 bits (162), Expect = 3e-31 Identities = 176/239 (74%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| || | | |||||| || || ||||| ||||| || ||||| || || Sbjct 6957 GCAAAGCGTCACCGTAAAGTTCTTCGCGACAATATCCAGGGAATTACGAAGCCTGCGATT 6898 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||| |||||||| | || || || |||||| || ||| ||| |||| || |||| | Sbjct 6897 CGTCGATTGGCTCGTAGAGGAGGTGTTAAGCGTATCAGTGGTTTGATCTACGAGGAGACT 6838 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | |||||||||||| ||||| ||| || || | ||||| | || || || Sbjct 6837 CGCGGTGTTTTGAAGATTTTCCTTGAGAATGTGATTCGAGATGCAGTGACATACACAGAA 6778 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || |||| | | || || || || |||||||| |||||||||||||||| | ||||| Sbjct 6777 CATGCTAGAAGGAAAACCGTGACAGCCATGGATGTCGTCTATGCATTGAAGAGGCAAGG 6719 >seq52271 Length=2076 Score = 140 bits (154), Expect = 5e-29 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| |||| ||| || |||||||| ||||| ||||| ||||| ||||| Sbjct 1815 GCAAAGCGTCACCGCAAGGTTCTCCGTGATAACATTCAAGGTATCACGAAGCCTGCTATT 1756 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||| | ||||| | | || ||||| ||| | || ||| ||| | |||||||||| Sbjct 1755 CGTAGATTGGCTAGAAGAGGCGGAGTAAAGAGAATCAGTGGGTTGATTTATGAAGAGACC 1696 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 | | ||| | ||||||||||| | | ||| |||| |||||| | || || ||| Sbjct 1695 AGAGGAGTTCTTAAGATCTTCCTAGAAAACGTAATCCGTGATGCCGTGACTTACACTGAG 1636 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAA 16662 ||||| | ||| ||||| |||||| |||||||| | |||||||| |||| Sbjct 1635 CACGCCAGACGAAAGACCGTCACCGCCATGGATGTGGTCTATGCTCTGAA 1586 >seq9161 Length=1167 Score = 134 bits (148), Expect = 2e-27 Identities = 176/244 (72%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||| | ||||| ||||| || || ||||| || ||||| ||||| Sbjct 500 GCGAAGCGTCATCGTAAGGTGCTTCGTGATAATATTCAGGGAATTACAAAGCCGGCTATT 441 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 | ||| |||||||| | || || || |||||| || ||| ||| |||| ||||| | Sbjct 440 AGGCGTTTGGCTCGTAGAGGAGGTGTGAAGCGTATCAGTGGTTTGATCTACGAAGAAACA 381 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 | | || |||||||| |||||| ||| ||||| ||||| || || || ||| Sbjct 380 AGAGGCGTGTTGAAGATATTCCTCGAGAATGTTATTAGGGATGCCGTCACTTACACTGAG 321 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 |||||| || || ||||||||| | ||||| |||| ||||| | ||| | ||||| Sbjct 320 CACGCTCGTCGGAAAACTGTCACCGCTATGGACGTCGTTTATGCTCTCAAAAGGCAAGGT 261 Query 16673 CGTA 16676 |||| Sbjct 260 CGTA 257 >seq126503 Length=652 Score = 125 bits (138), Expect = 1e-24 Identities = 174/244 (71%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||| | ||||| ||||| || || ||||| || ||||| ||||| Sbjct 391 GCGAAGCGTCATCGTAAGGTGCTTCGTGATAATATTCAGGGAATTACAAAGCCGGCTATT 332 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 | ||| |||||||| | || || || |||||| || ||| ||| |||| ||||| | Sbjct 331 AGGCGTTTGGCTCGTAGAGGAGGTGTGAAGCGTATCAGTGGTTTGATCTACGAAGAAACA 272 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 | | || |||||||| |||||| ||| || || ||||| || || || ||| Sbjct 271 AGAGGGGTGTTGAAGATATTCCTCGAGAATGTCATTAGGGATGCCGTCACTTACACTGAG 212 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 |||||| || || ||||| ||| | ||||| |||| ||||| | ||| | ||||| Sbjct 211 CACGCTCGTCGGAAAACTGTGACCGCTATGGACGTCGTTTATGCTCTCAAAAGGCAAGGT 152 Query 16673 CGTA 16676 |||| Sbjct 151 CGTA 148 >seq1376 Length=1273 Score = 109 bits (120), Expect = 9e-20 Identities = 164/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 ||||| || ||||| ||||| ||||| || || ||| | ||||| | | || || || Sbjct 1035 GATAATATTCAAGGTATCACAAAGCCTGCCATTCGTAGGTTGGCTAGAAGAGGAGGTGTT 976 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 ||| | | ||||| || ||||||| |||| ||||| || |||||||| ||| | || Sbjct 975 AAGAGAATTTCTGGGCTGATCTATGAGGAGACTCGTGGCGTGTTGAAGATTTTCTTGGAG 916 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | || || | ||||||| | ||| || ||||| || || ||||| || || | Sbjct 915 AATGTCATTCGTGATGCTGTTACCTACACTGAGCATGCCCGCCGCAAGACAGTAACTGCT 856 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 |||||| | || ||||||||||| | || ||| | | | ||||| ||||| Sbjct 855 ATGGATGTTGTTTATGCATTGAAGAGACAGGGCAGGACTCTATATGGATTTGG 803 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 78872356420515