Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asclepias_20syriaca_20[genbank_20GCA_5F002018285.1_202017-03-03] 221,855 sequences; 236,770,010 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq34486 196 6e-45 >seq34486 Length=7597 Score = 196 bits (216), Expect = 6e-45 Identities = 589/903 (65%), Gaps = 16/903 (2%) Strand=Plus/Minus Query 33013 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33072 || || ||||| || || | |||||||| ||||| || || || | ||| ||| Sbjct 4361 TTCTGATATTCTCCAACCCTCTTTTCGAAGAAATTGGTCTTACCCTGCAAACTGATAAGC 4302 Query 33073 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 33132 ||||| ||||||| |||||| ||||| || |||||| | ||||||| | | Sbjct 4301 TCCATCCAATCAAAAGGATTGTGGACATTGTACATTTTTCCATATCCCAAGGCTCCTAGT 4242 Query 33133 AATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 33192 ||||| ||||| || || || ||||| |||| | || | |||||| || | ||| Sbjct 4241 AATCTGTCCGCAACAAACTCAATATACTGACTCATGAGGTCTCCATTCATCCCAAGCAGT 4182 Query 33193 TTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATA 33252 | ||| || || || | ||| || || || || ||||| | || ||| Sbjct 4181 GCACATGGCAGCGCGTCACATACAAACTCCCTCTCTATTACCACGGCATCGGCTACAATT 4122 Query 33253 GATCTAACGGTTTCTTCACTCGGTGGA-TGCAAT---AAATGTTTAAACATCAAACATGC 33308 |||| |||| |||| | | | || ||| | | | | || || || Sbjct 4121 CCCCTAA----TTCTCTCCTCGCTCAACTTCACCTTCAAAAGGCTGTAGAGTAAGCAGGC 4066 Query 33309 GAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGG 33368 || || || || ||||||||||| || ||| | ||||| || || || | ||||| Sbjct 4065 AAAGTCACAATGAAGACCCTCGTCCCTCGAAATCAACTCGTTCGAGAAGGTTAAACCGGG 4006 Query 33369 CATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGAT-CCAGAAAAGAAGATTC 33427 || || ||||||||||| | |||||| || || || || | | || || || || |||| Sbjct 4005 CAATAAACCACGCTTTTTTAACCAAAAAATTGA-GCAAAAGCTTCCGGAGAAAAATATTC 3947 Query 33428 CTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCGCTGTCATGTATCC 33484 | || || ||| || |||| | | ||| | | | | || ||| ||||| Sbjct 3946 CCTCAACGCAAGCGAAAGCAACCAAACGCTCGGCGAAGGATTCTGAGCCGTC---TATCC 3890 Query 33485 ACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGA 33544 | | | ||||| | ||| ||||||| || ||||| || || || || || | ||||| Sbjct 3889 ATTGGAGGGCCCACTTGGCTTTCTTTTCCACGCAAGGGATGGTCTCGATTGCGTGAAAGA 3830 Query 33545 GATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCG 33604 | || || || || ||| |||| || || || | || ||||||||||| || | Sbjct 3829 GCCTGTGCTTCTCGTTGGAATCCTTAATGTACGTCTCCAACAGGAGACTATACATCTCGG 3770 Query 33605 AATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTA 33664 | ||||| || || ||||| || ||||| || |||||| | ||||||| || ||| | Sbjct 3769 AGTGAATATTCTCGATGGCTATTTGAAAACCATAGAAAGCACGGGCCTCGGAAACCTGGA 3710 Query 33665 CTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAA 33724 | || | || || | || | ||| || || || || || || ||||| | Sbjct 3709 CCTCCTTCATGAAACGACCGGCGAGATTCTCCAGAACAATGCCATCTGAAGCGGCAAAGA 3650 Query 33725 ACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGA 33784 | || | || || | ||||| | | ||| || || || ||||| | ||| | | Sbjct 3649 AGGCAAGAACGTGAGTAATAAAGTGTCGTTCATCGGGGGTAAGTTTTTCCCACTGGGAAA 3590 Query 33785 TATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACA 33844 |||| ||| | ||| ||||| || | ||||| || || ||||| ||||| || |||| Sbjct 3589 CATCTACAGAGAGATCGACTTCCTCGGCAGTCCAGAAGGAAGCCTCAGCCTTCTTGTACA 3530 Query 33845 TGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATTTGGATTTGGTGCAA 33904 | | ||| || ||| |||||||||||||| ||| ||||||| || ||||| || | Sbjct 3529 TCTCCCAAATCTCAGGGTATTGGATTGGGAACATACAGAATCTATCAGGGTTTGGGGCCA 3470 Query 33905 GGA 33907 ||| Sbjct 3469 GGA 3467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 621219650611800