Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asclepias_20syriaca_20[genbank_20GCA_5F002018285.1_202017-03-03] 221,855 sequences; 236,770,010 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq4542 96.9 3e-15 seq42083 86.0 5e-12 seq53181 82.4 7e-11 seq23310 82.4 7e-11 >seq4542 Length=2509 Score = 96.9 bits (106), Expect = 3e-15 Identities = 111/146 (76%), Gaps = 4/146 (3%) Strand=Plus/Minus Query 24084 GACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAA 24143 ||||||||||| || ||||| ||||| |||||||| |||| | || |||||| | ||| Sbjct 2252 GACAAAGAAGGTATTCCTCCTGATCAGCAGAGACTTATTTTTGCTGGTAAGCAATTGGAA 2193 Query 24144 GATGACAGAAACGTCAGC-GATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 |||| | | || | ||| || |||||||| || |||||||| || |||| || || || Sbjct 2192 GATGGCCG-TACTTTAGCTGACTATAACATCCAGAAAGAATCAACCCTTCACTTGGTTTT 2134 Query 24203 AAGATTGAGAGGAGGACTATAATGAT 24228 || | ||||||||| | |||||| Sbjct 2133 GAGGCTTAGAGGAGGA--ACAATGAT 2110 >seq42083 Length=68989 Score = 86.0 bits (94), Expect = 5e-12 Identities = 150/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 || ||||| | || || ||||| |||| || || | ||||| | || || ||| || Sbjct 15363 AAGATGCAGATCTTCGTGAAAACCCTAACCGGTAAGACCATTACTTTGGAGGTTGAGTCC 15304 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 ||| ||||| || | ||||| ||||| || || || ||||| || || ||| Sbjct 15303 TCCGATACCATTGACAATGTCAAGGCTAAGATACAGGATAAGGAGGGCATCCCGCCAGAT 15244 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTA 24166 || ||| | || || | || ||||||||| ||||| || | ||| | | | ||| ||||| Sbjct 15243 CAGCAGCGGCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCAGGACCCT-AGCTGATTA 15185 Query 24167 TAACATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 |||||| || || || || || | ||| | ||||| Sbjct 15184 TAACATCCAGAAGGAGTCAACCTTGCATCTGGTGTT 15149 >seq53181 Length=15488 Score = 82.4 bits (90), Expect = 7e-11 Identities = 138/200 (69%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 || ||||| | ||||| ||||| |||| || || | ||||| ||||||||||| Sbjct 6662 AAGATGCAGATCTTTGTCAAAACCCTAACCGGTAAGACAATTACTCTCGAAGTCGAGAGT 6603 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 ||| |||||||| | ||||| ||||| ||||| |||||||| ||||| ||| Sbjct 6602 TCCGATACCATCGATAATGTCAAGACTAAGATCCAAGACAAGGAAGGCATCCCTCCGGAT 6543 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 || ||| | || || | | ||| || || || || || | | | | | ||||||| Sbjct 6542 CAGCAGCGTCTCATATTTGCCGGTAAACAGCTTGAGGACGGCCGTACACTTGCCGATTAT 6483 Query 24168 AACATTCAAAAAGAATCTAC 24187 || ||||| || || || || Sbjct 6482 AATATTCAGAAGGAGTCCAC 6463 >seq23310 Length=1212 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/213 (69%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGA--GGCC 24047 ||||||| | ||||| || || ||||| || || | || || | || || || | | Sbjct 1163 AATGCAAATCTTTGTTAAGACCTTAACCGGGAAGACCATCACTCTTGAGGTGGAAAGTTC 1104 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 | |||||||| || | ||||| ||||||| ||||| ||||| || || || ||| Sbjct 1103 A--GACACCATTGACAATGTCAAGACAAAGATTCAAGACAAGGAAGGTATCCCACCAGAT 1046 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 || ||||| |||||| || || || ||||| || || | | | | | || || Sbjct 1045 CAGCAGAGGTTGATTTTCGCTGGTAAACAACTGGAGGACGGTCGTACCCTTGCTGACTAC 986 Query 24168 AACATTCAAAAAGAATCTACAATTCATTTAGTG 24200 || || || |||||||| || ||||||||||| Sbjct 985 AATATCCAGAAAGAATCAACTCTTCATTTAGTG 953 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428773514187525