Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asclepias_20syriaca_20[genbank_20GCA_5F002018285.1_202017-03-03] 221,855 sequences; 236,770,010 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq53181 102 7e-17 >seq53181 Length=15488 Score = 102 bits (112), Expect = 7e-17 Identities = 156/218 (72%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAA-CG-GAGTCCA 115343 |||||||| ||||||||||| ||||| || || || |||||| | ||| || |||| | Sbjct 5975 ATGCAAATATTTGTCAAAACTCTCACAGGTAAGACTATTACCTTGGAAGTCGAGAGTTCT 5916 Query 115344 GCGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 | ||| | ||||| || || || ||| || || ||||| |||| |||| Sbjct 5915 GATACAATC---GACAACGTTAAGGCTAAGATTCAGGACAAGGAAGGGATCCCTCCTGAT 5859 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 ||||| | || || | ||| || || || || ||||| | | |||| ||||||||||| Sbjct 5858 CAGCAGCGCCTGATCTTTGCCGGGAAGCAGTTGGAAGACGGGAGAACCTTGGCCGATTAT 5799 Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGTGTTGAG 115500 || || || || |||||||| ||||| | || ||||| Sbjct 5798 AATATCCAGAAGGAGTCTACCTTACATCTCGTCTTGAG 5761 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/215 (69%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGA--GTCCA 115343 |||||||| ||||| ||||| ||||| || || || ||||| | || || || | Sbjct 5747 ATGCAAATATTTGTTAAAACTCTCACAGGTAAGACGATTACTCTTGAGGTTGAAAGTTCT 5688 Query 115344 GCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403 | | || | | | || || ||||||| ||||| ||||| | ||| || | Sbjct 5687 G--ATACCATCGATAACGTCAAGGCAAAAATTCAAGATAAGGAAGGGATTCCCCCGGACC 5630 Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463 | || |||||||||| ||| || |||||||| || || | ||| |||||||||||| Sbjct 5629 AACAGAGACTTATTTTTGCTGGAAAACAATTGGAGGACGGACGAACATTGGCCGATTATA 5570 Query 115464 ACATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498 |||| ||||| ||||| || | || ||||| || Sbjct 5569 ACATACAAAAGGAGTCCACCCTTCACCTGGTGCTG 5535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424193930302600