Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asclepias_20syriaca_20[genbank_20GCA_5F002018285.1_202017-03-03] 221,855 sequences; 236,770,010 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq42083 143 3e-29 seq24190 138 1e-27 seq31911 131 2e-25 seq53181 118 1e-21 seq31910 118 1e-21 seq4370 109 5e-19 >seq42083 Length=68989 Score = 143 bits (158), Expect = 3e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATC-GCT 131066 ||||||||||| |||| ||| | ||| | ||| |||||||| || ||||| ||||| ||| Sbjct 15134 CCACCGCGCAAGCGCAACACCAGATGCAAGGTTGACTCCTTCTGGATGTTATAATCAGCT 15193 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||| | |||||| ||||||||||| ||| |||| | |||||||| || || || Sbjct 15194 -AGGGTCCTGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGATCTGGCGG 15252 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || || || || || ||||| | || | ||||||| |||||| | Sbjct 15253 GATGCCCTCCTTATCCTGTATCTTAGCCTTGACATTGTCAATGGTATCGGAGGACTCAAC 15312 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| ||| ||||||||||| ||||| ||||| |||||||| Sbjct 15313 CTCCAAAGTAATGGTCTTACCGGTTAGGGTTTTCACGAAGATCTGCAT 15360 >seq24190 Length=3131 Score = 138 bits (152), Expect = 1e-27 Identities = 171/229 (75%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAAT-CGCT 131066 |||||||||| ||| || || | ||| | ||| |||||||| || |||||||||| |||| Sbjct 1480 CCACCGCGCAGACGGAGAACCAGATGCAGGGTTGACTCCTTCTGGATGTTGTAATCCGCT 1421 Query 131067 CATGGTGC-GCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAG 131125 | ||| | || | ||||| |||||||| || ||| |||| | |||||||| || || | Sbjct 1420 -AGGGTCCTGCCA-TCCTCGAGCTGCTTTCCGGCGAAGATGAGCCGCTGCTGATCTGGTG 1363 Query 131126 GGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 | |||||||| ||||| |||||| ||||| | || | || |||| ||| || | Sbjct 1362 GAATTCCTTCCTTGTCTTGGATTTTAGCCTTGACATTGTCAATGGTGTCGGAGGATTCAA 1303 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| || ||||| ||||| ||||| ||||| |||||||| Sbjct 1302 CCTCCAGAGTAATTGTCTTACCCGTTAGGGTTTTGACGAAGATCTGCAT 1254 >seq31911 Length=2244 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| ||||| || || | ||| || ||||| || ||||||||||| Sbjct 1279 CCACCACGAAGACGAAGCACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAATCAGCG 1338 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| ||| || || |||||||| || || |||| || | ||||||||| || ||| Sbjct 1339 AGGGTACGCCCATCTTCAAGCTGCTTACCAGCAAAGATCAATCTCTGCTGGTCTGGGGGG 1398 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||| ||| ||| | | || | ||||| | | ||||| Sbjct 1399 ATCCCTTCCTTGTCTTGGATCTTCGCCTTAACATTGTCTATCGTATCAGAGCTCTCGACC 1458 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| |||| ||||| ||||| || ||||| |||||||||||||| Sbjct 1459 TCGAGAGTAATTGTTTTTCCGGTGAGGGTTTTCACGAAAATCTGCAT 1505 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| || | ||| ||||| || || | ||| || ||||| || |||||||| || Sbjct 594 GCCACCACGGAGACGAAGCACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCTGC 653 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| || || || |||||||| || |||| || | ||||||||| || || Sbjct 654 CAGGGTGCGACCATCTTCCAGTTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCTGGGGG 713 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| ||||| || || ||| | | || | ||||| | | ||| | Sbjct 714 AATACCTTCCTTGTCCTGTATCTTGGCCTTCACATTGTCAATGGTATCCGAGCTCTCCAC 773 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| |||||| || ||||||||||| || || |||||||| Sbjct 774 CTCTAATGTAATGGTTTTCCCAGTTAGAGTTTTCACAAATATCTGCAT 821 >seq53181 Length=15488 Score = 118 bits (130), Expect = 1e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131020 CGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAG 131079 || || || | ||| | ||| |||||||| ||||| || |||||| | || || | Sbjct 6445 CGGAGAACAAGATGGAGGGTGGACTCCTTCTGAATATTATAATCGGCAAGTGTACGGCCG 6504 Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 ||||| ||||| || || || | || | ||||||||| ||||||||||| ||||| ||| Sbjct 6505 TCCTCAAGCTGTTTACCGGCAAATATGAGACGCTGCTGATCCGGAGGGATGCCTTCCTTG 6564 Query 131140 TCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACG 131199 || ||| || ||||| | || | ||||||| ||||| |||| |||| Sbjct 6565 TCTTGGATCTTAGTCTTGACATTATCGATGGTATCGGAACTCTCGACTTCGAGAGTAATT 6624 Query 131200 GTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || ||||||||||| ||||| || || |||||||| Sbjct 6625 GTCTTACCGGTTAGGGTTTTGACAAAGATCTGCAT 6659 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||| | | || || | ||| | ||| |||||||| ||||| ||||||||| | Sbjct 6205 CCACCGCGGAGCCTCAAAACAAGATGAAGGGTAGACTCCTTCTGAATATTGTAATCGGCC 6264 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || | ||| || | ||||| || ||| |||| | | |||||| || ||||| Sbjct 6265 AACGTTCTGCCGTCTTCCAATTGCTTACCGGCGAAGATAAGTCTCTGCTGATCAGGAGGA 6324 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 ||||| || ||||| || ||| ||| | | || | ||||| | ||||| Sbjct 6325 ATTCCCTCCTTGTCCTGAATCTTCGCCTTAACGTTGTCGATGGTATCTGAACTCTCGACC 6384 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| || | || ||||||||||| ||||| ||||| |||||||| Sbjct 6385 TCGAGAGTGATCGTCTTACCGGTTAGGGTTTTAACGAAGATCTGCAT 6431 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||| | | || || | ||| | ||| |||||||| ||||||||||| ||| | Sbjct 5977 CCACCGCGGAGCCTCAAAACAAGATGAAGGGTAGACTCCTTCTGAATGTTGTAGTCGGCC 6036 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || | ||| || | |||||| || ||| |||| || |||||||| || ||||| Sbjct 6037 AAAGTTCTGCCGTCTTCCAACTGCTTACCGGCGAAGATCAAGCGCTGCTGATCAGGAGGA 6096 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 |||||||| || || || || ||| | | || | |||||| | |||| Sbjct 6097 ATTCCTTCCTTATCCTGAATCTTAGCCTTAACGTTGTCGATAGTATCAGAACTTTCGACT 6156 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | || |||||||| || ||||| || || || ||||| Sbjct 6157 TCCAAGGTGATCGTCTTACCGGTGAGGGTTTTGACAAATATTTGCAT 6203 >seq31910 Length=2189 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| || | ||| ||||| || || | ||| || ||||| || ||||||||||| Sbjct 1269 GCCACCACGAAGACGAAGCACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAATCAGC 1328 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||| || || || |||||||| || || |||| || | ||||||||| || || Sbjct 1329 GAGGGTACGGCCATCTTCAAGCTGCTTACCAGCAAAGATCAACCTCTGCTGGTCTGGGGG 1388 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| ||||| ||| ||| ||| | | || | ||||| | | ||||| Sbjct 1389 AATCCCTTCCTTGTCTTGGATCTTCGCCTTAACATTGTCTATCGTATCAGAGCTCTCGAC 1448 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| |||| ||||| ||||| || ||||| || ||||||||||| Sbjct 1449 CTCGAGAGTAATTGTTTTTCCGGTGAGGGTTTTCACAAAAATCTGCAT 1496 >seq4370 Length=4242 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| || | | ||||| || || | ||| |||||||| || ||||||||||| Sbjct 3219 GCCACCACGGAGCCTGAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAATCTGC 3278 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | |||||| || || || || || || ||| |||| || | |||||| || ||||| Sbjct 3279 GAGGGTGCGGCCATCTTCAAGTTGTTTACCAGCGAAGATCAACCTCTGCTGATCTGGAGG 3338 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| || || ||| || ||| | | || | ||||| | | ||||| Sbjct 3339 AATACCTTCCTTATCTTGGATCTTTGCCTTAACATTATCGATGGTATCCGAGCTCTCGAC 3398 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| |||| |||||| ||||| || ||||||||||| || ||||| Sbjct 3399 CTCGAGAGTAATGGTTTTTCCGGTGAGGGTTTTTACGAATATTTGCAT 3446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 470703820003200