Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asclepias_20syriaca_20[genbank_20GCA_5F002018285.1_202017-03-03] 221,855 sequences; 236,770,010 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq53181 102 7e-17 seq4370 89.7 4e-13 >seq53181 Length=15488 Score = 102 bits (112), Expect = 7e-17 Identities = 91/114 (80%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || |||| || | ||| |||| || || |||||||||||||||||||| || |||||| Sbjct 5521 CCACCTCTGAGACGCAGCACCAGGTGAAGGGTGGACTCCTTTTGTATGTTATAATCGGCC 5580 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCC 16822 | ||| |||||||||||||||| || ||| ||||||| | |||||||||| Sbjct 5581 AATGTTCGTCCGTCCTCCAATTGTTTTCCAGCAAAAATAAGTCTCTGTTGGTCC 5634 >seq4370 Length=4242 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||| || ||||||||||| || ||||||||||| |||| ||| | || Sbjct 2323 AGCACCAAATGAAGAGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGACCATCT 2382 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 |||| ||| || || ||| |||| | || ||| ||||| || | ||| || || || Sbjct 2383 TCCAGTTGCTTTCCGGCAAAAATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTATCC 2442 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 |||| |||||| | | | | ||||| | |||| |||| ||||| || Sbjct 2443 TGGATTTTGGCCTTCACATTGTCAATGGTGTCTGAGCTCTCCACCTCCAAAGTGATAGTC 2502 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || ||||| || || || |||||||| ||||| Sbjct 2503 TTACCGGTGAGGGTCTTCACAAAAATTTGCAT 2534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 403992699646450