Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asclepias_20syriaca_20[genbank_20GCA_5F002018285.1_202017-03-03] 221,855 sequences; 236,770,010 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq34486 185 1e-41 seq19857 84.2 3e-11 seq113474 82.4 1e-10 >seq34486 Length=7597 Score = 185 bits (204), Expect = 1e-41 Identities = 579/890 (65%), Gaps = 10/890 (1%) Strand=Plus/Minus Query 32370 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 32429 || || ||||| || || | |||||||| ||||| || ||||| | || ||| Sbjct 4361 TTCTGATATTCTCCAACCCTCTTTTCGAAGAAATTGGTCTTACCCTGCAAACTGATAAGC 4302 Query 32430 TCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 32489 ||||| |||| || |||||| ||||| || |||||| | ||||||| | | Sbjct 4301 TCCATCCAATCAAAAGGATTGTGGACATTGTACATTTTTCCATATCCCAAGGCTCCTAGT 4242 Query 32490 AATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 32549 ||||| || || ||||| || ||||| |||| | || | |||||| || | ||| Sbjct 4241 AATCTGTCCGCAACAAACTCAATATACTGACTCATGAGGTCTCCATTCATCCCAAGCAGT 4182 Query 32550 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATA 32609 | ||| || || || | ||| || || || || || || | || ||| Sbjct 4181 GCACATGGCAGCGCGTCACATACAAACTCCCTCTCTATTACCACGGCATCGGCTACAATT 4122 Query 32610 GATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAA 32669 || | | | || || ||| | ||| | | | | || || || || Sbjct 4121 CCCCTAATTCTCTCCTCGCTCAACTTCACCTTCAAAAGGCTGTAGAGTAAGCAGGCAAAG 4062 Query 32670 TCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATT 32729 || || || ||||||||||| || ||| || ||||| || || || | ||||||| | Sbjct 4061 TCACAATGAAGACCCTCGTCCCTCGAAATCAACTCGTTCGAGAAGGTTAAACCGGGCAAT 4002 Query 32730 AGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAAAATTCCTTC 32788 | ||||||||||| | |||||| || || ||||| | | || || || || ||||| || Sbjct 4001 AAACCACGCTTTTTTAACCAAAAAATTGA-GCAAAAGCTTCCGGAGAAAAATATTCCCTC 3943 Query 32789 TACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCGCTGTCATGTATCCACTT 32845 || || || |||| | | ||| | | | | || ||| |||||| | Sbjct 3942 AACGCAAGCGAAAGCAACCAAACGCTCGGCGAAGGATTCTGAGCCGTC---TATCCATTG 3886 Query 32846 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATA 32905 | ||||| | ||| ||||||| || ||||| || ||||| || || | |||||| Sbjct 3885 GAGGGCCCACTTGGCTTTCTTTTCCACGCAAGGGATGGTCTCGATTGCGTGAAAGAGCCT 3826 Query 32906 GtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATG 32965 || || || || ||| |||| || || || | || ||||||||||| || || || Sbjct 3825 GTGCTTCTCGTTGGAATCCTTAATGTACGTCTCCAACAGGAGACTATACATCTCGGAGTG 3766 Query 32966 AATGTTTTCAATGGCCATTTGAAATCCGTAG-AAGCATCTAGCCTCGGTAATCTGTACTT 33024 ||| || || ||||| |||||||| || ||| ||||| | ||||||| || ||| || | Sbjct 3765 AATATTCTCGATGGCTATTTGAAAACCATAGAAAGCA-CGGGCCTCGGAAACCTGGACCT 3707 Query 33025 CTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACG 33084 | | || || | || | ||| || || || || || || ||||| || | Sbjct 3706 CCTTCATGAAACGACCGGCGAGATTCTCCAGAACAATGCCATCTGAAGCGGCAAAGAAGG 3647 Query 33085 CCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATAT 33144 | | || || | ||||| | | ||| || || || ||||| | ||| | | || Sbjct 3646 CAAGAACGTGAGTAATAAAGTGTCGTTCATCGGGGGTAAGTTTTTCCCACTGGGAAACAT 3587 Query 33145 CTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATAT 33204 || ||| | ||| ||||| || | ||||| || || ||||| ||||| || ||||| | Sbjct 3586 CTACAGAGAGATCGACTTCCTCGGCAGTCCAGAAGGAAGCCTCAGCCTTCTTGTACATCT 3527 Query 33205 TCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGATTT 33254 ||| || ||| | ||||| ||||| || ||| ||||||| || ||| Sbjct 3526 CCCAAATCTCAGGGTATTGGATTGGGAACATACAGAATCTATCAGGGTTT 3477 >seq19857 Length=23048 Score = 84.2 bits (92), Expect = 3e-11 Identities = 122/170 (72%), Gaps = 2/170 (1%) Strand=Plus/Minus Query 62951 GATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAA 63010 |||||| || | |||| |||| ||| | | || | || || || || || ||||| Sbjct 2285 GATTTGGATTTTACTTCTTTTTCATATTGCTTGTAAAGTCTCTCAAATTCTTCACCCCAT 2226 Query 63011 ACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTC 63070 || ||||||||||| |||||| ||||| | ||| ||||| || || | || | Sbjct 2225 CAATCAGCCAGTCCAGGAGATTCATTTGGACAAAACAAAGACCATTCCCCATTATTTTCA 2166 Query 63071 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTC 63119 || | |||||||| |||||||| | ||||||||| ||| || ||||||| Sbjct 2165 ACCCTCTTCATAAAAAGATCAGGCACCCAAAGAGC-ATAGAAAAGATCTC 2117 >seq113474 Length=757 Score = 82.4 bits (90), Expect = 1e-10 Identities = 152/223 (68%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 63226 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63285 |||||| || || | || ||| || | |||| | || | || |||||| | |||||| Sbjct 166 TCCTCCTTGTTCCACATAAGGAGCAGTATCATTAAATACCCGCAGCATTGGCACAATACC 225 Query 63286 ATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63345 ||||||||| ||||| || ||| ||||| |||||| | || || || || ||| || Sbjct 226 ATTGGATGTCCCATTTGTACCTCGAATATAACTTCCAGTTGCTCGGATGTTGTGAATAGA 285 Query 63346 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 63405 ||||| || || || || ||| ||| || ||| || | |||||||| || Sbjct 286 AAGACCAATCCCTCCAGCTGATTTGCTGATATCAGCACATTCCTTAAGGGTATCATAAAT 345 Query 63406 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 63448 ||| || || || || || ||||| | | ||||||||| Sbjct 346 GCCTTCAATGCTGTCTTCTTTCATGCACACCAAGAAACAGCTA 388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 631874819658000