Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Asclepias_20syriaca_20[genbank_20GCA_5F002018285.1_202017-03-03]
221,855 sequences; 236,770,010 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq4370 131 1e-25
seq23310 125 6e-24
seq53181 123 2e-23
seq4542 102 7e-17
seq31910 93.3 4e-14
>seq4370
Length=4242
Score = 131 bits (144), Expect = 1e-25
Identities = 156/212 (74%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| ||||| ||||| | |||||||| | ||||| | || |||||| ||
Sbjct 2534 ATGCAAATTTTTGTGAAGACCCTCACCGGTAAGACTATCACTTTGGAGGTGGAGAGCTCA 2475
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||||| || || ||||| |||||| || || ||||| ||||| || |||||
Sbjct 2474 GACACCATTGACAATGTGAAGGCCAAAATCCAGGATAAGGAAGGCATTCCCCCAGACCAG 2415
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||| || | ||||||||||| || ||| | ||||||| |||||| ||| || |||||
Sbjct 2414 CAGAGGTTGATTTTTGCCGGAAAGCAACTGGAAGATGGTCGCACCCTGGCTGACTACAAC 2355
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|| || || || ||||| || ||||| |||||
Sbjct 2354 ATCCAGAAGGAGTCCACTCTTCATTTGGTGCT 2323
Score = 118 bits (130), Expect = 9e-22
Identities = 154/213 (72%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057
||||||||||||||| |||||| | || || || | || || | || |||||| ||
Sbjct 2763 AATGCAAATATTTGTCAAGACTCTCACGGGCAAGACTATTACTTTGGAGGTGGAGAGCTC 2704
Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
||||| || || ||||| || ||| || || ||||| ||||| || |||||
Sbjct 2703 GGACACGATTGACAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCAGACCA 2644
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
||| || | ||||||||||| || ||| | ||||| | ||| || ||| |||||||||
Sbjct 2643 GCAGAGGTTGATTTTTGCCGGTAAGCAACTGGAAGACGGTCGTACCCTGGCCGATTACAA 2584
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|| || || || ||||| || || || |||||
Sbjct 2583 CATCCAGAAGGAGTCCACACTTCACTTGGTGCT 2551
Score = 111 bits (122), Expect = 1e-19
Identities = 159/223 (71%), Gaps = 1/223 (0%)
Strand=Plus/Minus
Query 24995 AACA-ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGT 25053
|||| ||||||||||| ||||| || | ||||| ||| |||| || |||| || |||
Sbjct 3451 AACAGATGCAAATATTCGTAAAAACCCTCACCGGAAAAACCATTACTCTCGAGGTCGAGA 3392
Query 25054 CGTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113
|| || || ||||| | ||| ||| ||| || || ||||| ||||| || |
Sbjct 3391 GCTCGGATACCATCGATAATGTTAAGGCAAAGATCCAAGATAAGGAAGGTATTCCTCCAG 3332
Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173
| || ||| || | || || || || |||||| | ||||||| ||||| | | ||||
Sbjct 3331 ATCAGCAGAGGTTGATCTTCGCTGGTAAACAACTTGAAGATGGCCGCACCCTCGCAGATT 3272
Query 25174 ACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216
|||| || || || || ||||| || || || ||||| |||||
Sbjct 3271 ACAACATCCAGAAGGAGTCCACCCTGCACTTGGTGCTCAGGCT 3229
>seq23310
Length=1212
Score = 125 bits (138), Expect = 6e-24
Identities = 169/231 (73%), Gaps = 6/231 (3%)
Strand=Plus/Minus
Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057
||||||||| ||||| ||||| || ||||| || ||||||| | || ||||| ||
Sbjct 1163 AATGCAAATCTTTGTTAAGACCTTAACCGGGAAGACCATCACTCTTGAGGTGGAAAGTTC 1104
Query 25058 TGACACTATCGAGTCACTG--AAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114
||||| || || || || ||| |||| | ||| ||||| ||||| || ||||| ||
Sbjct 1103 AGACACCATTGA--CAATGTCAAGACAAAGATTCAA-GACAAGGAAGGTATCCCACCAGA 1047
Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174
|| ||| || | ||||| || || |||||| | || || | ||| || | | || ||
Sbjct 1046 TCAGCAGAGGTTGATTTTCGCTGGTAAACAACTGGAGGACGGTCGTACCCTTGCTGACTA 987
Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
|||||| || |||||||| || || ||||||||||| |||| || || ||
Sbjct 986 CAATATCCAGAAAGAATCAACTCTTCATTTAGTGCTGCGGCTGAGGGGTGG 936
Score = 102 bits (112), Expect = 7e-17
Identities = 152/213 (71%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| ||||| || ||||||||||| ||||| ||||||| | ||||||||| ||
Sbjct 934 ATGCAGATATTCGTGAAGACTTTGACTGGTAAGACCATCACTTTGGAAGTGGAGAGCTCA 875
Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
||||| || || | ||| | || | ||| ||||| ||||| ||||| || || ||
Sbjct 874 GACACCATTGATAATGTCAAGACCAAGATTCA-GGACAAGGAAGGCATTCCTCCAGATCA 816
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
|| || | |||||||| || || || | || |||| | || | | || |||||
Sbjct 815 GCAACGCTTGATTTTTGCTGGAAAGCAGCTTGAGGATGGGAGGACCCTTGCTGACTACAA 756
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
||| || || ||||| || || ||||| |||||
Sbjct 755 TATCCAGAAGGAATCGACTCTTCATTTGGTGCT 723
>seq53181
Length=15488
Score = 123 bits (136), Expect = 2e-23
Identities = 168/229 (73%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||||||||| || ||| | || ||||| | || || | || || || |||
Sbjct 5747 ATGCAAATATTTGTTAAAACTCTCACAGGTAAGACGATTACTCTTGAGGTTGAAAGTTCT 5688
Query 25059 GACACTATCGAGTCAC-TGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116
|| || ||||| | || | ||| |||||| ||| || || ||||||||||| || ||||
Sbjct 5687 GATACCATCGA-TAACGTCAAGGCAAAAATTCAA-GATAAGGAAGGGATTCCCCCGGACC 5630
Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176
||||| | |||||||||| || |||||||| || || | || || ||| |||||| |
Sbjct 5629 AACAGAGACTTATTTTTGCTGGAAAACAATTGGAGGACGGACGAACATTGGCCGATTATA 5570
Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
| || ||||| || ||||| || || | ||||| | || ||||| ||
Sbjct 5569 ACATACAAAAGGAGTCCACCCTTCACCTGGTGCTGCGTCTCAGAGGTGG 5521
Score = 100 bits (110), Expect = 2e-16
Identities = 155/219 (71%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||||||||| || ||| | || ||||| | || || | ||||| ||| |||
Sbjct 5975 ATGCAAATATTTGTCAAAACTCTCACAGGTAAGACTATTACCTTGGAAGTCGAGAGTTCT 5916
Query 25059 GACACTATCGA-GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
|| || ||||| | | | || || | ||| ||||| |||||||| || ||||| ||
Sbjct 5915 GATACAATCGACAACGTTAAGGCTAAGATTCA-GGACAAGGAAGGGATCCCTCCTGATCA 5857
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
||||| | || |||||||| || || || ||||| | | || ||| |||||| ||
Sbjct 5856 GCAGCGCCTGATCTTTGCCGGGAAGCAGTTGGAAGACGGGAGAACCTTGGCCGATTATAA 5797
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216
||| || || || || || ||||| | || | |||||
Sbjct 5796 TATCCAGAAGGAGTCTACCTTACATCTCGTCTTGAGGCT 5758
Score = 100 bits (110), Expect = 2e-16
Identities = 155/219 (71%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||||||||| || || | |||||||| | ||||| | ||||| || |||
Sbjct 6203 ATGCAAATATTTGTCAAAACCCTCACCGGTAAGACGATCACCTTGGAAGTCGAAAGTTCT 6144
Query 25059 GACACTATCGA-GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
|| |||||||| | | | || || | ||| || || ||||| ||||| ||||| ||
Sbjct 6143 GATACTATCGACAACGTTAAGGCTAAGATTCA-GGATAAGGAAGGAATTCCTCCTGATCA 6085
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
||||| | || || ||||| || || || ||||| | | ||| ||| ||| |||||
Sbjct 6084 GCAGCGCTTGATCTTCGCCGGTAAGCAGTTGGAAGACGGCAGAACTTTGGCCGACTACAA 6025
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216
||||| || || || || || ||| | || | |||||
Sbjct 6024 CATTCAGAAGGAGTCTACCCTTCATCTTGTTTTGAGGCT 5986
Score = 91.5 bits (100), Expect = 1e-13
Identities = 153/219 (70%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || || || | |||||||| | ||||| |||| || ||| ||
Sbjct 6431 ATGCAGATCTTCGTTAAAACCCTAACCGGTAAGACGATCACTCTCGAGGTCGAGAGTTCA 6372
Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
|| || ||||| | ||| | || | ||| ||||| || || ||||| ||||| ||
Sbjct 6371 GATACCATCGACAACGTTAAGGCGAAGATTCAG-GACAAGGAGGGAATTCCTCCTGATCA 6313
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
||| | |||| || ||||| || ||||| ||||| | | || ||| |||||||||
Sbjct 6312 GCAGAGACTTATCTTCGCCGGTAAGCAATTGGAAGACGGCAGAACGTTGGCCGATTACAA 6253
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216
|||||| || || || || || ||| | || | |||||
Sbjct 6252 TATTCAGAAGGAGTCTACCCTTCATCTTGTTTTGAGGCT 6214
>seq4542
Length=2509
Score = 102 bits (112), Expect = 7e-17
Identities = 104/136 (76%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 25092 GACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAA 25151
||||||||||| ||||| ||||| || ||| | |||||||||| || || ||||| |||
Sbjct 2252 GACAAAGAAGGTATTCCTCCTGATCAGCAGAGACTTATTTTTGCTGGTAAGCAATTGGAA 2193
Query 25152 GATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211
|||| || ||| | | || || || || || |||||||| || || || || || |
Sbjct 2192 GATGGCCGTACTTTAGCTGACTATAACATCCAGAAAGAATCAACCCTTCACTTGGTTTTG 2133
Query 25212 AGGCTAAGAGGAGGAA 25227
||||| ||||||||||
Sbjct 2132 AGGCTTAGAGGAGGAA 2117
>seq31910
Length=2189
Score = 93.3 bits (102), Expect = 4e-14
Identities = 150/214 (70%), Gaps = 4/214 (2%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| || || | ||||| ||| | || || |||| || ||| |||
Sbjct 1496 ATGCAGATTTTTGTGAAAACCCTCACCGGAAAAACAATTACTCTCGAGGTCGAGAGCTCT 1437
Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116
|| || || || || || ||| || ||| ||||| ||||||||||| || ||||
Sbjct 1436 GATACGATAGA--CAATGTTAAGGCGAAGATCCAAGACAAGGAAGGGATTCCCCCAGACC 1379
Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176
| ||| || | || ||||| || || || | ||||||| || || | | |||||||
Sbjct 1378 AGCAGAGGTTGATCTTTGCTGGTAAGCAGCTTGAAGATGGCCGTACCCTCGCTGATTACA 1319
Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
| || || || ||||| || || || || |||||
Sbjct 1318 ACATCCAGAAGGAATCAACCCTTCACTTGGTGCT 1285
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 432156342701825
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |