Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asclepias_20syriaca_20[genbank_20GCA_5F002018285.1_202017-03-03] 221,855 sequences; 236,770,010 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq4370 131 1e-25 seq23310 125 6e-24 seq53181 123 2e-23 seq4542 102 7e-17 seq31910 93.3 4e-14 >seq4370 Length=4242 Score = 131 bits (144), Expect = 1e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| | |||||||| | ||||| | || |||||| || Sbjct 2534 ATGCAAATTTTTGTGAAGACCCTCACCGGTAAGACTATCACTTTGGAGGTGGAGAGCTCA 2475 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || ||||| |||||| || || ||||| ||||| || ||||| Sbjct 2474 GACACCATTGACAATGTGAAGGCCAAAATCCAGGATAAGGAAGGCATTCCCCCAGACCAG 2415 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | ||||||||||| || ||| | ||||||| |||||| ||| || ||||| Sbjct 2414 CAGAGGTTGATTTTTGCCGGAAAGCAACTGGAAGATGGTCGCACCCTGGCTGACTACAAC 2355 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || ||||| || ||||| ||||| Sbjct 2354 ATCCAGAAGGAGTCCACTCTTCATTTGGTGCT 2323 Score = 118 bits (130), Expect = 9e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||||||||| |||||| | || || || | || || | || |||||| || Sbjct 2763 AATGCAAATATTTGTCAAGACTCTCACGGGCAAGACTATTACTTTGGAGGTGGAGAGCTC 2704 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || || ||||| || ||| || || ||||| ||||| || ||||| Sbjct 2703 GGACACGATTGACAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCAGACCA 2644 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | ||||||||||| || ||| | ||||| | ||| || ||| ||||||||| Sbjct 2643 GCAGAGGTTGATTTTTGCCGGTAAGCAACTGGAAGACGGTCGTACCCTGGCCGATTACAA 2584 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || ||||| || || || ||||| Sbjct 2583 CATCCAGAAGGAGTCCACACTTCACTTGGTGCT 2551 Score = 111 bits (122), Expect = 1e-19 Identities = 159/223 (71%), Gaps = 1/223 (0%) Strand=Plus/Minus Query 24995 AACA-ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGT 25053 |||| ||||||||||| ||||| || | ||||| ||| |||| || |||| || ||| Sbjct 3451 AACAGATGCAAATATTCGTAAAAACCCTCACCGGAAAAACCATTACTCTCGAGGTCGAGA 3392 Query 25054 CGTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 || || || ||||| | ||| ||| ||| || || ||||| ||||| || | Sbjct 3391 GCTCGGATACCATCGATAATGTTAAGGCAAAGATCCAAGATAAGGAAGGTATTCCTCCAG 3332 Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173 | || ||| || | || || || || |||||| | ||||||| ||||| | | |||| Sbjct 3331 ATCAGCAGAGGTTGATCTTCGCTGGTAAACAACTTGAAGATGGCCGCACCCTCGCAGATT 3272 Query 25174 ACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216 |||| || || || || ||||| || || || ||||| ||||| Sbjct 3271 ACAACATCCAGAAGGAGTCCACCCTGCACTTGGTGCTCAGGCT 3229 >seq23310 Length=1212 Score = 125 bits (138), Expect = 6e-24 Identities = 169/231 (73%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||| ||||| || ||||| || ||||||| | || ||||| || Sbjct 1163 AATGCAAATCTTTGTTAAGACCTTAACCGGGAAGACCATCACTCTTGAGGTGGAAAGTTC 1104 Query 25058 TGACACTATCGAGTCACTG--AAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| || || || || ||| |||| | ||| ||||| ||||| || ||||| || Sbjct 1103 AGACACCATTGA--CAATGTCAAGACAAAGATTCAA-GACAAGGAAGGTATCCCACCAGA 1047 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 || ||| || | ||||| || || |||||| | || || | ||| || | | || || Sbjct 1046 TCAGCAGAGGTTGATTTTCGCTGGTAAACAACTGGAGGACGGTCGTACCCTTGCTGACTA 987 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||||| || |||||||| || || ||||||||||| |||| || || || Sbjct 986 CAATATCCAGAAAGAATCAACTCTTCATTTAGTGCTGCGGCTGAGGGGTGG 936 Score = 102 bits (112), Expect = 7e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| ||||| || ||||||||||| ||||| ||||||| | ||||||||| || Sbjct 934 ATGCAGATATTCGTGAAGACTTTGACTGGTAAGACCATCACTTTGGAAGTGGAGAGCTCA 875 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || || | ||| | || | ||| ||||| ||||| ||||| || || || Sbjct 874 GACACCATTGATAATGTCAAGACCAAGATTCA-GGACAAGGAAGGCATTCCTCCAGATCA 816 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 || || | |||||||| || || || | || |||| | || | | || ||||| Sbjct 815 GCAACGCTTGATTTTTGCTGGAAAGCAGCTTGAGGATGGGAGGACCCTTGCTGACTACAA 756 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| || || ||||| || || ||||| ||||| Sbjct 755 TATCCAGAAGGAATCGACTCTTCATTTGGTGCT 723 >seq53181 Length=15488 Score = 123 bits (136), Expect = 2e-23 Identities = 168/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||||||||| || ||| | || ||||| | || || | || || || ||| Sbjct 5747 ATGCAAATATTTGTTAAAACTCTCACAGGTAAGACGATTACTCTTGAGGTTGAAAGTTCT 5688 Query 25059 GACACTATCGAGTCAC-TGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 || || ||||| | || | ||| |||||| ||| || || ||||||||||| || |||| Sbjct 5687 GATACCATCGA-TAACGTCAAGGCAAAAATTCAA-GATAAGGAAGGGATTCCCCCGGACC 5630 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 ||||| | |||||||||| || |||||||| || || | || || ||| |||||| | Sbjct 5629 AACAGAGACTTATTTTTGCTGGAAAACAATTGGAGGACGGACGAACATTGGCCGATTATA 5570 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 | || ||||| || ||||| || || | ||||| | || ||||| || Sbjct 5569 ACATACAAAAGGAGTCCACCCTTCACCTGGTGCTGCGTCTCAGAGGTGG 5521 Score = 100 bits (110), Expect = 2e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||||||||| || ||| | || ||||| | || || | ||||| ||| ||| Sbjct 5975 ATGCAAATATTTGTCAAAACTCTCACAGGTAAGACTATTACCTTGGAAGTCGAGAGTTCT 5916 Query 25059 GACACTATCGA-GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || ||||| | | | || || | ||| ||||| |||||||| || ||||| || Sbjct 5915 GATACAATCGACAACGTTAAGGCTAAGATTCA-GGACAAGGAAGGGATCCCTCCTGATCA 5857 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | || |||||||| || || || ||||| | | || ||| |||||| || Sbjct 5856 GCAGCGCCTGATCTTTGCCGGGAAGCAGTTGGAAGACGGGAGAACCTTGGCCGATTATAA 5797 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216 ||| || || || || || ||||| | || | ||||| Sbjct 5796 TATCCAGAAGGAGTCTACCTTACATCTCGTCTTGAGGCT 5758 Score = 100 bits (110), Expect = 2e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||||||||| || || | |||||||| | ||||| | ||||| || ||| Sbjct 6203 ATGCAAATATTTGTCAAAACCCTCACCGGTAAGACGATCACCTTGGAAGTCGAAAGTTCT 6144 Query 25059 GACACTATCGA-GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || |||||||| | | | || || | ||| || || ||||| ||||| ||||| || Sbjct 6143 GATACTATCGACAACGTTAAGGCTAAGATTCA-GGATAAGGAAGGAATTCCTCCTGATCA 6085 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | || || ||||| || || || ||||| | | ||| ||| ||| ||||| Sbjct 6084 GCAGCGCTTGATCTTCGCCGGTAAGCAGTTGGAAGACGGCAGAACTTTGGCCGACTACAA 6025 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216 ||||| || || || || || ||| | || | ||||| Sbjct 6024 CATTCAGAAGGAGTCTACCCTTCATCTTGTTTTGAGGCT 5986 Score = 91.5 bits (100), Expect = 1e-13 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || || | |||||||| | ||||| |||| || ||| || Sbjct 6431 ATGCAGATCTTCGTTAAAACCCTAACCGGTAAGACGATCACTCTCGAGGTCGAGAGTTCA 6372 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || ||||| | ||| | || | ||| ||||| || || ||||| ||||| || Sbjct 6371 GATACCATCGACAACGTTAAGGCGAAGATTCAG-GACAAGGAGGGAATTCCTCCTGATCA 6313 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| | |||| || ||||| || ||||| ||||| | | || ||| ||||||||| Sbjct 6312 GCAGAGACTTATCTTCGCCGGTAAGCAATTGGAAGACGGCAGAACGTTGGCCGATTACAA 6253 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216 |||||| || || || || || ||| | || | ||||| Sbjct 6252 TATTCAGAAGGAGTCTACCCTTCATCTTGTTTTGAGGCT 6214 >seq4542 Length=2509 Score = 102 bits (112), Expect = 7e-17 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 25092 GACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAA 25151 ||||||||||| ||||| ||||| || ||| | |||||||||| || || ||||| ||| Sbjct 2252 GACAAAGAAGGTATTCCTCCTGATCAGCAGAGACTTATTTTTGCTGGTAAGCAATTGGAA 2193 Query 25152 GATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211 |||| || ||| | | || || || || || |||||||| || || || || || | Sbjct 2192 GATGGCCGTACTTTAGCTGACTATAACATCCAGAAAGAATCAACCCTTCACTTGGTTTTG 2133 Query 25212 AGGCTAAGAGGAGGAA 25227 ||||| |||||||||| Sbjct 2132 AGGCTTAGAGGAGGAA 2117 >seq31910 Length=2189 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| || || | ||||| ||| | || || |||| || ||| ||| Sbjct 1496 ATGCAGATTTTTGTGAAAACCCTCACCGGAAAAACAATTACTCTCGAGGTCGAGAGCTCT 1437 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 || || || || || || ||| || ||| ||||| ||||||||||| || |||| Sbjct 1436 GATACGATAGA--CAATGTTAAGGCGAAGATCCAAGACAAGGAAGGGATTCCCCCAGACC 1379 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||| || | || ||||| || || || | ||||||| || || | | ||||||| Sbjct 1378 AGCAGAGGTTGATCTTTGCTGGTAAGCAGCTTGAAGATGGCCGTACCCTCGCTGATTACA 1319 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 | || || || ||||| || || || || ||||| Sbjct 1318 ACATCCAGAAGGAATCAACCCTTCACTTGGTGCT 1285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 432156342701825