Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asclepias_20syriaca_20[genbank_20GCA_5F002018285.1_202017-03-03] 221,855 sequences; 236,770,010 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq34486 188 8e-43 seq16652 89.7 6e-13 seq40865 84.2 2e-11 seq32096 84.2 2e-11 >seq34486 Length=7597 Score = 188 bits (208), Expect = 8e-43 Identities = 414/610 (68%), Gaps = 9/610 (1%) Strand=Plus/Minus Query 93081 TGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGC 93140 |||| | |||||| |||||||| ||| | ||| ||||| | || |||||||| || Sbjct 4081 TGTAGAGTAAGCAGGCAAAGTCACAATGAAGACCCTCGTCCCTCGAAATCAACTCGTTCG 4022 Query 93141 TGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAA-CTA 93199 ||| |||||||| || || | || || || || | |||||| ||||| |||||| || Sbjct 4021 AGAAGGTTAAACCGGGCAATAAACCACGCTTTTTTAACCAAAAAATTGA-GCAAAAGCTT 3963 Query 93200 CCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCG 93259 || || |||||||| || || ||| || || || || | ||| ||||| || | | Sbjct 3962 CCGGAGAAAAATATTCCCTCAACGCAAGCGAAAGCAACCAAACGCTCGGCGAAGGATTCT 3903 Query 93260 GAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTT 93319 || | || ||||||| | ||||| | |||||| || | | ||||| | || Sbjct 3902 GAGC--CGTCT-ATCCATTGGAGGGCCCACTTGGCTTTCTTTTCCACGCAAGGGATGGTC 3846 Query 93320 TCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAAC 93379 ||||| |||| ||| || | ||||| ||||| ||||| || || | | Sbjct 3845 TCGATTGCGTGAAAGAGCCTGTGCTTCTCGTTGGAATCCTTAATGTACGTCTCCAACAGG 3786 Query 93380 AGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTA 93439 ||| |||||| || || || | |||||| || || ||||| || || |||||| | Sbjct 3785 AGACTATACATCTCGGAGTGAATATTCTCGATGGCTATTTGAAAACCATAGAAAGCACGG 3726 Query 93440 GCTTCCGTGATCTGCACTTC-TTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACC 93498 || || | | ||| || || || | ||| | | ||||||| || || || || Sbjct 3725 GCCTCGGAAACCTGGACCTCCTTCATGAAACGAC-CGGCGAGATTCTCCAGAACAATGCC 3667 Query 93499 ATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAG 93558 ||| || || ||||| || || | | || | ||||| ||| ||||| |||| Sbjct 3666 ATCTGAAGCGGCAAAGAAGGCAAGAACGTGAGTAATAAAGTGTCGTTCATCGGGGGTAAG 3607 Query 93559 CTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGC 93618 || ||||| | ||| | |||| || ||||||||||| ||| ||||||| || || || Sbjct 3606 TTTTTCCCACTGGGAAACATCTACAGAGAGATCGACTTCCTCGGCAGTCCAGAAGGAAGC 3547 Query 93619 TTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACA-AAAC 93677 || || || |||||||| ||||| || || | ||||| ||||| || || ||| || | Sbjct 3546 CTCAGCCTTCTTGTACATCTCCCAAATCTCAGGGTATTGGATTGGGAACAT-ACAGAATC 3488 Query 93678 GATTAGGGTT 93687 || |||||| Sbjct 3487 TATCAGGGTT 3478 >seq16652 Length=3811 Score = 89.7 bits (98), Expect = 6e-13 Identities = 85/107 (79%), Gaps = 5/107 (5%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 705 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGC 764 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTT 126369 |||||||| || ||||| |||||| | || || ||||||| || Sbjct 765 GTGGGTTCAAATCCCACTTCTGACA---TTTTTTTAAAATTTTTTTT 808 >seq40865 Length=17860 Score = 84.2 bits (92), Expect = 2e-11 Identities = 73/88 (83%), Gaps = 6/88 (7%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCG---GGA- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| ||| Sbjct 10002 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAAAGGAG 10059 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAA 126348 |||||||||| || ||||| ||||||| Sbjct 10060 GCGTGGGTTCAAATCCCACTTCTGACAA 10087 >seq32096 Length=8640 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/78 (85%), Gaps = 2/78 (3%) Strand=Plus/Plus Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAG 126321 |||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | | Sbjct 3562 CAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGG 3621 Query 126322 CGTGGGTTCGAACCCCAC 126339 ||||||||| || ||||| Sbjct 3622 CGTGGGTTCAAATCCCAC 3639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 555316520590200