Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asclepias_20syriaca_20[genbank_20GCA_5F002018285.1_202017-03-03] 221,855 sequences; 236,770,010 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq33542 122 2e-22 seq126512 93.3 9e-14 seq43197 93.3 9e-14 seq99865 87.8 4e-12 seq31975 87.8 4e-12 seq7008 87.8 4e-12 seq212820 84.2 4e-11 seq19840 84.2 4e-11 >seq33542 Length=6995 Score = 122 bits (134), Expect = 2e-22 Identities = 168/232 (72%), Gaps = 5/232 (2%) Strand=Plus/Minus Query 218574 TCCCAGCG-TGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCG--CATT 218630 ||||| || |||| |||||||| |||||| || | ||||| ||||| | | | || Sbjct 2650 TCCCATCGATGGTTGATGGCCTGAAGCCAGGTCAAAGAAAGAT--TCTTTACTGTTCTTT 2593 Query 218631 CAAGCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAAT 218690 |||| | ||| | || | ||| || || |||||||| ||||||||||| || || Sbjct 2592 CAAGAGAAACTTTGTCAAGGAAGCAAAAGTAGCTCAGTTCTCTGGTTATGTCTCTGAGCA 2533 Query 218691 TTCTGGCTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGA 218750 || | |||||||| |||||||||||||| | |||| | || ||||| ||||| Sbjct 2532 CTCAGCTTACCATCATGGTGAGCAGAGTCTCGCCAGCACCATAATTGGTATGGCTCAGGA 2473 Query 218751 CTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGT 218802 | ||||||||||||||| || || | || | || || |||||||||||| Sbjct 2472 TTTTGTGGGCAGTAACAATATCAATCTTCTTCAACCAAATGGTCAGTTTGGT 2421 >seq126512 Length=590 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 134 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 75 Query 142563 CCCCAC 142568 |||||| Sbjct 74 CCCCAC 69 >seq43197 Length=5024 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 4835 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 4894 Query 142563 CCCCAC 142568 |||||| Sbjct 4895 CCCCAC 4900 >seq99865 Length=509 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 287 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 346 Query 142563 CCCCAC 142568 |||||| Sbjct 347 CCCCAC 352 >seq31975 Length=2963 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 1811 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 1870 Query 142563 CCCCAC 142568 |||||| Sbjct 1871 CCCCAC 1876 Score = 84.2 bits (92), Expect = 4e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||| | |||||||||| || ||||||| || ||||||||||||||||| Sbjct 2014 AGCCCGTCTAGCTCATTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 2073 Query 142563 CCCCAC 142568 |||||| Sbjct 2074 CCCCAC 2079 >seq7008 Length=1593 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 852 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 911 Query 142563 CCCCAC 142568 |||||| Sbjct 912 CCCCAC 917 >seq212820 Length=689 Score = 84.2 bits (92), Expect = 4e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| ||||||||| || ||||||| || ||||||||||||||||| Sbjct 352 AGCCCGTCTAGCTCAGTTAGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 411 Query 142563 CCCCAC 142568 |||||| Sbjct 412 CCCCAC 417 >seq19840 Length=1303 Score = 84.2 bits (92), Expect = 4e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || || |||| || ||||||||||||||||| Sbjct 128 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTTTTAACCTTGTGGTCGTGGGTTCGAG 69 Query 142563 CCCCAC 142568 |||||| Sbjct 68 CCCCAC 63 Score = 84.2 bits (92), Expect = 4e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || |||||| |||||||||| Sbjct 530 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCATGGGTTCGAG 471 Query 142563 CCCCAC 142568 |||||| Sbjct 470 CCCCAC 465 Score = 84.2 bits (92), Expect = 4e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| | ||||||||||||||||| Sbjct 772 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACTTTGTGGTCGTGGGTTCGAG 713 Query 142563 CCCCAC 142568 |||||| Sbjct 712 CCCCAC 707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1024915156230055