Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asclepias_20syriaca_20[genbank_20GCA_5F002018285.1_202017-03-03] 221,855 sequences; 236,770,010 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq53181 109 5e-19 seq4370 95.1 1e-14 seq31910 91.5 1e-13 seq31911 89.7 4e-13 seq24190 86.0 5e-12 seq4542 86.0 5e-12 >seq53181 Length=15488 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||||||||| |||| | ||| | ||| | || || || || ||||| || |||||| Sbjct 6430 ATACCGCCACGGAGTCGGAGAACAAGATGGAGGGTGGACTCCTTCTGAATATTATAATCG 6489 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||||| || ||||| |||||||| || | ||||||||||| || |||||| Sbjct 6490 GCAAGTGTACGGCCGTCCTCAAGCTGTTTACCGGCAAATATGAGACGCTGCTGATCCGGA 6549 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || |||||||| ||||| ||||| || | | || | ||| |||| ||| Sbjct 6550 GGGATGCCTTCCTTGTCTTGGATCTTAGTCTTGACATTATCGATGGTATCGGAACTCTCG 6609 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | || || ||||| || ||||| ||||| |||||||| Sbjct 6610 ACTTCGAGAGTAATTGTCTTACCGGTTAGGGTTTTGACAAAGATCTGCAT 6659 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || || || || |||||||| | ||| | ||||| || || ||||||||||| ||| Sbjct 5974 ATCCCACCGCGGAGCCTCAAAACAAGATGAAGGGTAGACTCCTTCTGAATGTTGTAGTCG 6033 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || ||| | ||||| | || ||||| ||| |||| | ||||| || || ||| Sbjct 6034 GCCAAAGTTCTGCCGTCTTCCAACTGCTTACCGGCGAAGATCAAGCGCTGCTGATCAGGA 6093 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||| || || |||||| || | | || | || || | |||| Sbjct 6094 GGAATTCCTTCCTTATCCTGAATCTTAGCCTTAACGTTGTCGATAGTATCAGAACTTTCG 6153 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | ||| || ||||| || ||||| ||||| || ||||| Sbjct 6154 ACTTCCAAGGTGATCGTCTTACCGGTGAGGGTTTTGACAAATATTTGCAT 6203 >seq4370 Length=4242 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || || | || || || | || || || || || ||||||||||| Sbjct 3217 ATGCCACCACGGAGCCTGAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAATCT 3276 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || |||||||||||||||||||||| |||| | | ||| || || ||| Sbjct 3277 GCGAGGGTGCGGCCATCTTCAAGTTGTTTACCAGCGAAGATCAACCTCTGCTGATCTGGA 3336 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||| || || |||||| || | | || | ||| || | | ||| Sbjct 3337 GGAATACCTTCCTTATCTTGGATCTTTGCCTTAACATTATCGATGGTATCCGAGCTCTCG 3396 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | ||||| ||||| || |||||||| || || ||||| Sbjct 3397 ACCTCGAGAGTAATGGTTTTTCCGGTGAGGGTTTTTACGAATATTTGCAT 3446 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || || || | || || || || || |||||||||||| Sbjct 2533 ATACCACCACGGAGACGGAGCACCAAGTGAAGTGTGGACTCCTTCTGGATGTTGTAATCG 2592 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || |||||| ||||| ||||| ||||| || | || | | ||| ||||| || Sbjct 2593 GCCAGGGTACGACCGTCTTCCAGTTGCTTACCGGCAAAAATCAACCTCTGCTGGTCTGGG 2652 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||| || || ||||| || | | |||| ||||| | | || Sbjct 2653 GGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTGTCAATCGTGTCCGAGCTCTCC 2712 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | || ||||| || ||||| || ||||| || ||||| Sbjct 2713 ACCTCCAAAGTAATAGTCTTGCCCGTGAGAGTCTTGACAAATATTTGCAT 2762 >seq31910 Length=2189 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || || || | || ||||| || || |||||||| || Sbjct 583 ATACCACCACGGAGACGAAGCACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCT 642 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || ||| |||||| ||||| || ||||| |||| | | ||| ||||| || Sbjct 643 GCCAGGGTGCGACCATCTTCCAGTTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCGGGG 702 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||| || || || || ||| | | |||| ||| || | | || Sbjct 703 GGAATGCCTTCCTTATCCTGGATTTTAGCTTTCACATTATCAATGGTATCCGAGCTCTCC 762 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | ||||| || || |||||||| ||||| |||||||| Sbjct 763 ACCTCTAATGTTATGGTTTTTCCTGTGAGAGTTTTCACAAATATCTGCAT 812 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | | || || || | || ||||| || || ||||||||||| Sbjct 1267 ATGCCACCACGAAGACGAAGCACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAATCA 1326 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||||| ||||||||| || |||||||| |||| | | ||| ||||| || Sbjct 1327 GCGAGGGTACGGCCATCTTCAAGCTGCTTACCAGCAAAGATCAACCTCTGCTGGTCTGGG 1386 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||| ||||| ||||| || | | || | || || | | ||| Sbjct 1387 GGAATCCCTTCCTTGTCTTGGATCTTCGCCTTAACATTGTCTATCGTATCAGAGCTCTCG 1446 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | ||||| ||||| || ||||| |||||||||||||| Sbjct 1447 ACCTCGAGAGTAATTGTTTTTCCGGTGAGGGTTTTCACAAAAATCTGCAT 1496 Score = 89.7 bits (98), Expect = 4e-13 Identities = 150/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 114167 TCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGA 114226 ||| | ||| || || | || ||||| || ||||||||||| || | ||| || Sbjct 1053 TCTAAGAACCAAGTGAAGGGTTGATTCCTTCTGAATGTTGTAGTCTGCAAGAGTCCGTCC 1112 Query 114227 ATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTT 114286 ||||||||| || || ||||| |||| | | ||| ||||| || ||||| ||||| || Sbjct 1113 ATCTTCAAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGGGGAATACCTTCCTT 1172 Query 114287 GTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCAC 114346 ||| |||||| || | | |||| ||| || | | || || |||| || | Sbjct 1173 GTCCTGAATCTTGGCCTTCACATTGTCAATGGTATCCGAGCTCTCCACCTCCAATGTTAT 1232 Query 114347 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || || ||||| || ||||| || ||||| |||||| Sbjct 1233 GGTCTTCCCGGTGAGGGTTTTCACGAAAATTTGCATG 1269 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| || || || ||||| || || || ||| |||||| ||||| || ||| Sbjct 388 GTGGATTCCTTCTGGATATTGTAGTCTGCCAGGGTGCGACCATCTTCCAGTTGCTTGCCA 447 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| | | ||| ||||| || ||||||||||| || || ||||| ||| Sbjct 448 GCAAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTATCCTGGATCTTAGCTTTC 507 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||| || | | || || |||| || | ||||| || || || ||| Sbjct 508 ACATTATCAATGGTATCCGAGCTCTCCACCTCCAATGTTATGGTTTTCCCAGTGAGTGTT 567 Query 114366 TTTACAAAAATCTGCAT 114382 || |||||||| ||||| Sbjct 568 TTAACAAAAATTTGCAT 584 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| || ||||||||||| || | || || ||||||||| || || ||| Sbjct 844 GTTGATTCCTTCTGAATGTTGTAGTCTGCAAGGGTCCGTCCATCTTCAAGCTGCTTTCCA 903 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| | | ||| ||||| || ||||||||||| || || |||||| || Sbjct 904 GCAAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTATCCTGAATCTTGGCCTTC 963 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| || || | | || || || | || || ||||| || || |||||| Sbjct 964 ACATTGTCAATTGTATCCGAGCTCTCCACCTCTAGTGTTACGGTTTTCCCAGTGAGAGTT 1023 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 1024 TTCACAAATATCTGCAT 1040 >seq31911 Length=2244 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 114174 ACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCA 114233 || ||||| | || |||||||| ||||||||||| || | || || ||||||| Sbjct 841 ACCAAATGAAGGGTTGATTCTTTCTGAATGTTGTAGTCTGCAAGGGTCCGTCCATCTTCA 900 Query 114234 AGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCA 114293 || || || ||||| |||| | | ||| ||||| | ||||| ||||| || || Sbjct 901 AGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCTGAGGGAATACCTTCCTTATCCTGT 960 Query 114294 ATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTG 114353 ||||| |||| | |||| ||| || | | || || || | || | ||||| Sbjct 961 ATCTTGGCCTTTACATTGTCAATGGTATCCGAGCTCTCCACCTCTAGTGTTATGGTTTTT 1020 Query 114354 CCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||||| |||||||| ||||| |||||||| Sbjct 1021 CCGGTGAGAGTTTTCACAAATATCTGCAT 1049 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || || || | || ||||| || || ||||||||||| Sbjct 1276 ATACCACCACGAAGACGAAGCACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAATCA 1335 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||||| ||||||||| || |||||||| |||| | | ||| ||||| || Sbjct 1336 GCGAGGGTACGCCCATCTTCAAGCTGCTTACCAGCAAAGATCAATCTCTGCTGGTCTGGG 1395 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || ||||| ||||| ||||| || | | || | || || | | ||| Sbjct 1396 GGGATCCCTTCCTTGTCTTGGATCTTCGCCTTAACATTGTCTATCGTATCAGAGCTCTCG 1455 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | ||||| ||||| || ||||| || ||||||||||| Sbjct 1456 ACCTCGAGAGTAATTGTTTTTCCGGTGAGGGTTTTCACGAAAATCTGCAT 1505 >seq24190 Length=3131 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAAT-CGC 114213 ||| || || || | | ||| | ||| | || || || || || |||||||||| ||| Sbjct 1481 ACCACCGCGCAGACGGAGAACCAGATGCAGGGTTGACTCCTTCTGGATGTTGTAATCCGC 1422 Query 114214 TCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAG 114273 | | || | ||| || || || || || ||| ||||||| ||||| || || || | Sbjct 1421 T-AGGGTCCTGCCATCCTCGAGCTGCTTTCCGGCGAAGATGAGCCGCTGCTGATCTGGTG 1363 Query 114274 GAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGA 114333 |||| ||||| ||||| || || || | | |||| |||||||| |||||| | Sbjct 1362 GAATTCCTTCCTTGTCTTGGATTTTAGCCTTGACATTGTCAATGGTGTCGGAGGATTCAA 1303 Query 114334 CGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | |||| || | || || || || || ||||| || || |||||||| Sbjct 1302 CCTCCAGAGTAATTGTCTTACCCGTTAGGGTTTTGACGAAGATCTGCAT 1254 >seq4542 Length=2509 Score = 86.0 bits (94), Expect = 5e-12 Identities = 96/126 (76%), Gaps = 2/126 (2%) Strand=Plus/Plus Query 114165 AGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATC-GCTCATAGTACG 114223 || |||||||| || || | || |||||||| || ||||| || || ||| | |||||| Sbjct 2128 AGCCTCAAAACCAAGTGAAGGGTTGATTCTTTCTGGATGTTATAGTCAGCTAA-AGTACG 2186 Query 114224 AGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTC 114283 |||||| | ||| |||||||| | || || | ||| || || |||||||| ||||| Sbjct 2187 GCCATCTTCCAATTGCTTACCAGCAAAAATAAGTCTCTGCTGATCAGGAGGAATACCTTC 2246 Query 114284 TTTGTC 114289 |||||| Sbjct 2247 TTTGTC 2252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418998416320260