Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asclepias_20syriaca_20[genbank_20GCA_5F002018285.1_202017-03-03] 221,855 sequences; 236,770,010 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq34486 136 7e-27 >seq34486 Length=7597 Score = 136 bits (150), Expect = 7e-27 Identities = 292/433 (67%), Gaps = 5/433 (1%) Strand=Plus/Plus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || |||||||| ||||| || || ||||| || ||||| || ||| | |||||| Sbjct 3643 CTTGCCTTCTTTGCCGCTTCAGATGGCATTGTTCTGGAGAATCTCGCCGGTCGTTTCATG 3702 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTT-CTACGGCTTCCAGATAGCCATAGAGAA 42541 || ||||| ||| | ||||| || ||||| ||| || || || |||||||| ||||| Sbjct 3703 AAGGAGGTCCAGGTTTCCGAGGCCCG-TGCTTTCTATGGTTTTCAAATAGCCATCGAGAA 3761 Query 42542 CGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCG 42601 | ||||| ||| |||| ||| | | |||||||| |||| || |||| Sbjct 3762 TATTCACTCCGAGATGTATAGTCTCCTGTTGGAGACGTACATTAAGGATTCCAACGAGAA 3821 Query 42602 TAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGC 42661 || |||| || | || || ||||| || || ||| | | ||||| || | ||||| Sbjct 3822 GCACAGGCTCTTTCACGCAATCGAGACCATCCCTTGCGTGGAAAAGAAAGCCAAGTGGGC 3881 Query 42662 GCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGC 42721 ||| | ||||| || | | || | | |||| |||| | |||| || || | Sbjct 3882 CCTCCAATGGATAGACGGCTCAGA---ATCCTTCGCCGAGCGTTTGGTTGCTTTCGCTTG 3938 Query 42722 CGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGT 42781 ||| ||||| || || ||||| || ||| ||| || || ||| | || || | Sbjct 3939 CGTTGAGGGAATATTTTTCTCCGGAAGCTTTTGCTCAATTTTTTGGTTAAAAAAGCGTGG 3998 Query 42782 GTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAG 42841 | ||||||| | |||||||||||||| | || ||||||||||| || ||| | Sbjct 3999 TTTATTGCCCGGTTTAACCTTCTCGAACGAGTTGATTTCGAGGGACGAGGGTCTTCATTG 4058 Query 42842 GGACTTTGCCTGC 42854 |||||||||||| Sbjct 4059 TGACTTTGCCTGC 4071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 941720370334800