Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asclepias_20syriaca_20[genbank_20GCA_5F002018285.1_202017-03-03] 221,855 sequences; 236,770,010 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq53181 105 5e-18 >seq53181 Length=15488 Score = 105 bits (116), Expect = 5e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 |||| || || |||||||| || |||||||||||||||||| || ||||| || Sbjct 5986 AGCCTCAAAACAAGATGAAGGGTAGACTCCTTCTGAATGTTGTAGTCGGCCAAAGTTCTG 6045 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| ||||| ||||| ||||| || |||| |||||||||||| || | | || Sbjct 6046 CCGTCTTCCAACTGCTTACCGGCGAAGATCAAGCGCTGCTGATCAGGAGGAATTCCTTCC 6105 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCATTCGACCGTT 34089 || ||| ||| || ||||| | | | |||||| | |||| ||| | || Sbjct 6106 TTATCCTGAATCTTAGCCTTAACGTTGTCGATAGTATCAGAACTTTCGACTTCCAAGGTG 6165 Query 34090 ATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || || || ||||| || ||||| ||||| |||||||| Sbjct 6166 ATCGTCTTACCGGTGAGGGTTTTGACAAATATTTGCAT 6203 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| ||||| || ||||||||||| ||||| ||| |||||| || ||||| ||||| || Sbjct 5520 ACCACCTCTGAGACGCAGCACCAGGTGAAGGGTGGACTCCTTTTGTATGTTATAATCGGC 5579 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 |||| ||| |||| |||||||| || || ||||| || || | ||| || ||| || Sbjct 5580 CAATGTTCGTCCGTCCTCCAATTGTTTTCCAGCAAAAATAAGTCTCTGTTGGTCCGGGGG 5639 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCA 34079 | | || || || ||||||| ||| | | | | |||||| | ||| Sbjct 5640 AATCCCTTCCTTATCTTGAATTTTTGCCTTGACGTTATCGATGGTATCAGAACTTTCAAC 5699 Query 34080 TTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || | || || || || || || || ||||| ||||| |||||||| Sbjct 5700 CTCAAGAGTAATCGTCTTACCTGTGAGAGTTTTAACAAATATTTGCAT 5747 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 |||| || || |||||||| || |||||||||||| |||||||| ||||| || Sbjct 6214 AGCCTCAAAACAAGATGAAGGGTAGACTCCTTCTGAATATTGTAATCGGCCAACGTTCTG 6273 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| ||||||||||| ||||| || || || | ||||||||| || | | ||| Sbjct 6274 CCGTCTTCCAATTGCTTACCGGCGAAGATAAGTCTCTGCTGATCAGGAGGAATTCCCTCC 6333 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCATTCGACCGTT 34089 |||||| ||| || ||||| | | |||| | | ||| |||| || Sbjct 6334 TTGTCCTGAATCTTCGCCTTAACGTTGTCGATGGTATCTGAACTCTCGACCTCGAGAGTG 6393 Query 34090 ATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || || || |||||||| ||||| || ||||| ||||| Sbjct 6394 ATCGTCTTACCGGTTAGGGTTTTAACGAAGATCTGCAT 6431 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 |||| || || ||||| | || ||||||||| || || ||||| ||||| || | Sbjct 5758 AGCCTCAAGACGAGATGTAAGGTAGACTCCTTCTGGATATTATAATCGGCCAAGGTTCTC 5817 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| ||||| ||||| |||||||| ||||||||||||||||| || | | || Sbjct 5818 CCGTCTTCCAACTGCTTCCCGGCAAAGATCAGGCGCTGCTGATCAGGAGGGATCCCTTCC 5877 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCATTCGACCGTT 34089 |||||| ||| || ||||| | | |||||| | ||| ||| | || Sbjct 5878 TTGTCCTGAATCTTAGCCTTAACGTTGTCGATTGTATCAGAACTCTCGACTTCCAAGGTA 5937 Query 34090 ATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || || || || || || ||||| ||||| |||||||| Sbjct 5938 ATAGTCTTACCTGTGAGAGTTTTGACAAATATTTGCAT 5975 Score = 82.4 bits (90), Expect = 6e-11 Identities = 106/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || ||||| || || || || || || || ||| ||||||||||||||||||||| | | Sbjct 5293 CCACCTCTAAGACGGAGGACAAGGTGGAGTGTGGACTCCTTCTGAATGTTGTAATCAG-C 5351 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || || ||| | || || | |||||| || ||||| || || | |||||||||| || Sbjct 5352 AAGGGTGCGCCCATCCTCTAGTTGCTTCCCAGCAAAAATGAGCCTCTGCTGATCCGGGGG 5411 Query 34020 CACGCTCTCTTTGTCCATAATTTT 34043 | | ||| |||||| ||| || Sbjct 5412 AATCCCCTCCTTGTCCTGAATCTT 5435 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395988799727710