Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Asclepias_20syriaca_20[genbank_20GCA_5F002018285.1_202017-03-03]
221,855 sequences; 236,770,010 total letters
Query= NC_009503.1
Length=124121
Score E
Sequences producing significant alignments: (Bits) Value
seq53181 105 5e-18
>seq53181
Length=15488
Score = 105 bits (116), Expect = 5e-18
Identities = 154/218 (71%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969
|||| || || |||||||| || |||||||||||||||||| || ||||| ||
Sbjct 5986 AGCCTCAAAACAAGATGAAGGGTAGACTCCTTCTGAATGTTGTAGTCGGCCAAAGTTCTG 6045
Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029
|||| ||||| ||||| ||||| || |||| |||||||||||| || | | ||
Sbjct 6046 CCGTCTTCCAACTGCTTACCGGCGAAGATCAAGCGCTGCTGATCAGGAGGAATTCCTTCC 6105
Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCATTCGACCGTT 34089
|| ||| ||| || ||||| | | | |||||| | |||| ||| | ||
Sbjct 6106 TTATCCTGAATCTTAGCCTTAACGTTGTCGATAGTATCAGAACTTTCGACTTCCAAGGTG 6165
Query 34090 ATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127
|| || || ||||| || ||||| ||||| ||||||||
Sbjct 6166 ATCGTCTTACCGGTGAGGGTTTTGACAAATATTTGCAT 6203
Score = 100 bits (110), Expect = 2e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959
||| ||||| || ||||||||||| ||||| ||| |||||| || ||||| ||||| ||
Sbjct 5520 ACCACCTCTGAGACGCAGCACCAGGTGAAGGGTGGACTCCTTTTGTATGTTATAATCGGC 5579
Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019
|||| ||| |||| |||||||| || || ||||| || || | ||| || ||| ||
Sbjct 5580 CAATGTTCGTCCGTCCTCCAATTGTTTTCCAGCAAAAATAAGTCTCTGTTGGTCCGGGGG 5639
Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCA 34079
| | || || || ||||||| ||| | | | | |||||| | |||
Sbjct 5640 AATCCCTTCCTTATCTTGAATTTTTGCCTTGACGTTATCGATGGTATCAGAACTTTCAAC 5699
Query 34080 TTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127
|| | || || || || || || || ||||| ||||| ||||||||
Sbjct 5700 CTCAAGAGTAATCGTCTTACCTGTGAGAGTTTTAACAAATATTTGCAT 5747
Score = 96.9 bits (106), Expect = 3e-15
Identities = 152/218 (70%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969
|||| || || |||||||| || |||||||||||| |||||||| ||||| ||
Sbjct 6214 AGCCTCAAAACAAGATGAAGGGTAGACTCCTTCTGAATATTGTAATCGGCCAACGTTCTG 6273
Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029
|||| ||||||||||| ||||| || || || | ||||||||| || | | |||
Sbjct 6274 CCGTCTTCCAATTGCTTACCGGCGAAGATAAGTCTCTGCTGATCAGGAGGAATTCCCTCC 6333
Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCATTCGACCGTT 34089
|||||| ||| || ||||| | | |||| | | ||| |||| ||
Sbjct 6334 TTGTCCTGAATCTTCGCCTTAACGTTGTCGATGGTATCTGAACTCTCGACCTCGAGAGTG 6393
Query 34090 ATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127
|| || || |||||||| ||||| || ||||| |||||
Sbjct 6394 ATCGTCTTACCGGTTAGGGTTTTAACGAAGATCTGCAT 6431
Score = 91.5 bits (100), Expect = 1e-13
Identities = 151/218 (69%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969
|||| || || ||||| | || ||||||||| || || ||||| ||||| || |
Sbjct 5758 AGCCTCAAGACGAGATGTAAGGTAGACTCCTTCTGGATATTATAATCGGCCAAGGTTCTC 5817
Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029
|||| ||||| ||||| |||||||| ||||||||||||||||| || | | ||
Sbjct 5818 CCGTCTTCCAACTGCTTCCCGGCAAAGATCAGGCGCTGCTGATCAGGAGGGATCCCTTCC 5877
Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCATTCGACCGTT 34089
|||||| ||| || ||||| | | |||||| | ||| ||| | ||
Sbjct 5878 TTGTCCTGAATCTTAGCCTTAACGTTGTCGATTGTATCAGAACTCTCGACTTCCAAGGTA 5937
Query 34090 ATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127
|| || || || || || ||||| ||||| ||||||||
Sbjct 5938 ATAGTCTTACCTGTGAGAGTTTTGACAAATATTTGCAT 5975
Score = 82.4 bits (90), Expect = 6e-11
Identities = 106/144 (74%), Gaps = 2/144 (1%)
Strand=Plus/Plus
Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960
|| ||||| || || || || || || || ||| ||||||||||||||||||||| | |
Sbjct 5293 CCACCTCTAAGACGGAGGACAAGGTGGAGTGTGGACTCCTTCTGAATGTTGTAATCAG-C 5351
Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019
|| || ||| | || || | |||||| || ||||| || || | |||||||||| ||
Sbjct 5352 AAGGGTGCGCCCATCCTCTAGTTGCTTCCCAGCAAAAATGAGCCTCTGCTGATCCGGGGG 5411
Query 34020 CACGCTCTCTTTGTCCATAATTTT 34043
| | ||| |||||| ||| ||
Sbjct 5412 AATCCCCTCCTTGTCCTGAATCTT 5435
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 395988799727710
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |