Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asclepias_20syriaca_20[genbank_20GCA_5F002018285.1_202017-03-03] 221,855 sequences; 236,770,010 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq34486 102 1e-16 >seq34486 Length=7597 Score = 102 bits (112), Expect = 1e-16 Identities = 369/569 (65%), Gaps = 19/569 (3%) Strand=Plus/Minus Query 125759 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 125818 || || ||||||| ||| |||||||| || ||||| || | ||| |||||| |||||| Sbjct 4355 TATTCTCCAACCCTCTTTTCGAAGAAATTGGTCTTACCCTGCAAACTGATAAGCTCCATC 4296 Query 125819 AAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGC-ACCCCAAT-CTGTTTGAGGAGAC 125876 ||||||| || || | || | ||| || | ||||| || | || | | Sbjct 4295 CAATCAAAAGGATTGTGGACATTGTACATTTTTCCATATCCCAAGGCTCCT--AGTAATC 4238 Query 125877 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 125936 |||| || ||||||| |||| | ||| || ||||| || | || || Sbjct 4237 TGTCCGCAACAAACTCAATATACTGACTCATGAGGTCTCCATTCATCCCAAGCAGTGCAC 4178 Query 125937 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCGT 125996 |||| |||||||| | | ||| || |||| ||| ||||||| || || || | Sbjct 4177 ATGGCAGCGCGTCACATACAAACTCCCTCTCTATTACCACGGCATCGGCTACAATTCCCC 4118 Query 125997 GAATGGTGTCCACCCCAGGTCTATTGCGC-----AAAGTCTTGAAGAGTTCCACGGCAAA 126051 ||| | ||| | | || | | | | |||| || | ||||| |||||| Sbjct 4117 TAATTCTCTCCTCGC----TCAACTTCACCTTCAAAAGGCT-GTAGAGTAAGCAGGCAAA 4063 Query 126052 CTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCAT 126111 || || ||||||||||| | || || | || ||||||||| | || |||| Sbjct 4062 GTCACAATGAAGACCCTCGTCCCTCGAAATCAACTCGTTCGAGAAGGTTAAACCGGGCAA 4003 Query 126112 GAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTC 126171 | ||| ||||| || ||||| ||||| | ||||| || ||||| || |||||||| Sbjct 4002 TAAACCACGCTTTTTTAACCAAAAAATTGAGCAAAAGCTTCCGGAGAAAAATATTCCCTC 3943 Query 126172 CACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTT 126231 || || ||||| |||| | |||||| || ||||| || ||| | ||| | Sbjct 3942 AACGCAAGCGAAAGCAACCAAACGCTCGGCGAAGGATTCTGA---GCCGTCTATCCATTG 3886 Query 126232 CATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTC 126291 | ||||||| || || || || | || |||| ||||| ||| || | |||||| Sbjct 3885 GAGGGCCCACTTGGCTTTCTTTTCCACGCAAGGGATGGTCTCGATTGCGTGAAAGAGCCT 3826 Query 126292 CTTCTTTTCTGATGG-ATCTTTGATGTAC 126319 | ||| || | ||| ||| || |||||| Sbjct 3825 GTGCTTCTC-GTTGGAATCCTTAATGTAC 3798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595697026463400