Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asclepias_20syriaca_20[genbank_20GCA_5F002018285.1_202017-03-03] 221,855 sequences; 236,770,010 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq23310 96.9 4e-15 seq53181 86.0 7e-12 seq4370 84.2 2e-11 >seq23310 Length=1212 Score = 96.9 bits (106), Expect = 4e-15 Identities = 153/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 |||| ||| ||||| | || || || || |||||||| ||||| || || || || Sbjct 948 CGCAGCACTAAATGAAGAGTTGATTCTTTCTGGATATTGTAGTCAGCAAGGGTACGACCG 1007 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || || || || ||||||||||| || | | |||||| || | ||| | | |||||| Sbjct 1008 TCCTCCAGTTGTTTACCAGCGAAAATCAACCTCTGCTGATCTGGTGGGATACCTTCCTTG 1067 Query 42114 TCCATGATTTTTTGT-TTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172 | | ||| | ||||| |||| | | | ||||| |||||| || | ||||| Sbjct 1068 T-CTTGAATCTTTGTCTTGACATTGTCAATGGTGTCTGAACTTTCCACCTCAAGAGTGAT 1126 Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 ||| || || |||| ||||| ||||||||||||||| Sbjct 1127 GGTCTTCCCGGTTAAGGTCTTAACAAAGATTTGCATT 1163 >seq53181 Length=15488 Score = 86.0 bits (94), Expect = 7e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || ||||| | ||| | || | || | |||| |||||| ||||| ||||||||||| Sbjct 5293 CCACCTCTAAGACGGAGGACAAGGTGGAGTGTGGACTCCTTCTGAATGTTGTAATCAGCA 5352 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || ||| | || ||||| ||||| ||||| || ||||| | |||||| || | || Sbjct 5353 AGGGTGCGCCCATCCTCTAGTTGCTTCCCAGCAAAAATGAGCCTCTGCTGATCCGGGGGA 5412 Query 42102 ACGCTCTCCTTGTCC 42116 | | |||||||||| Sbjct 5413 ATCCCCTCCTTGTCC 5427 Score = 82.4 bits (90), Expect = 8e-11 Identities = 138/196 (70%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| |||||||||||||| |||| || | |||| || | |||||||| ||||| Sbjct 6240 CTCCTTCTGAATATTGTAATCGGCCAACGTTCTGCCGTCTTCCAATTGCTTACCGGCGAA 6299 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || |||| |||||| || | || | | |||||||||| ||| | || | | | ||| Sbjct 6300 GATAAGTCTCTGCTGATCAGGAGGAATTCCCTCCTTGTCC-TGAATCTTCGCCTTAACGT 6358 Query 42137 CG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 42192 | | | || || ||| || || |||| ||||| || || || ||||| || | Sbjct 6359 TGTCGATGGTATCTGAACTC---TCGACCTCGAGAGTGATCGTCTTACCGGTTAGGGTTT 6415 Query 42193 TTACAAAGATTTGCAT 42208 | || ||||| ||||| Sbjct 6416 TAACGAAGATCTGCAT 6431 >seq4370 Length=4242 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 |||||| |||| ||| ||||| || || || ||||| ||||| || || | || || Sbjct 3009 CACCAAGTGCAGGGTGGATTCCTTCTGGATGTTATAATCTGCCAGGGTGCGGCCATCTTC 3068 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 ||||||||||| ||||| || | | ||||||||| | ||| | | |||||||||| Sbjct 3069 AAGCTGCTTACCGGCGAAGATCAACCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCCTG 3128 Query 42119 GATTTT 42124 |||||| Sbjct 3129 GATTTT 3134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 541706369053200