Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asclepias_20syriaca_20[genbank_20GCA_5F002018285.1_202017-03-03] 221,855 sequences; 236,770,010 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq53181 89.7 5e-13 seq31911 86.0 6e-12 >seq53181 Length=15488 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| | ||||| || | || | | | ||||||||||| ||||| || ||| | Sbjct 5521 CCACCTCTGAGACGCAGCACCAGGTGAAGGGTGGACTCCTTTTGTATGTTATAATCGGCC 5580 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || |||||| | |||||| || | | | || || | |||||||||||| || Sbjct 5581 AATGTTCGTCCGTCCTCCAATTGTTTTCCAGCAAAAATAAGTCTCTGTTGGTCCGGGGGA 5640 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| || || ||| |||||| || | | || | ||| || | || || Sbjct 5641 ATCCCTTCCTTATC-TTGAATTTTTGCCTTGACGTTATCGATGGTATCAGAACTTTCAAC 5699 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | ||| ||||| || |||||||| ||||| || ||||| Sbjct 5700 CTCAAGAGTAATCGTCTTACCTGTGAGAGTTTTAACAAATATTTGCAT 5747 >seq31911 Length=2244 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || || | ||| | || || || | | |||| ||||| || ||||||||||| Sbjct 594 GCCACCACGGAGACGAAGCACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCTGC 653 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || || || || ||||| || || | | |||| | | ||| ||||| || || Sbjct 654 CAGGGTGCGACCATCTTCCAGTTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCTGGGGG 713 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCA 138565 |||||||| ||||| || || || | |||| || | ||| || | ||||| Sbjct 714 AATACCTTCCTTGTCCTGTATCTTGGCCTTCACATTG-TCAATGGTATCCGAGCTCTCCA 772 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | ||||| ||||| |||||||| ||||| |||||||| Sbjct 773 CCTCTAATGTAATGGTTTTCCCAGTTAGAGTTTTCACAAATATCTGCAT 821 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494886171315600