Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asclepias_20syriaca_20[genbank_20GCA_5F002018285.1_202017-03-03] 221,855 sequences; 236,770,010 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq53181 138 1e-27 seq31911 107 2e-18 seq31910 107 2e-18 seq23310 105 6e-18 seq42083 95.1 1e-14 seq4370 93.3 4e-14 seq24190 86.0 6e-12 >seq53181 Length=15488 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | | ||| || | ||| | |||||||| || ||||||||||||||| || Sbjct 6205 CCACCGCGGAGCCTCAAAACAAGATGAAGGGTAGACTCCTTCTGAATATTGTAATCGGCC 6264 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||| | || || | || || || ||| |||| | || ||||||||| ||||| Sbjct 6265 AACGTTCTGCCGTCTTCCAATTGCTTACCGGCGAAGATAAGTCTCTGCTGATCAGGAGGA 6324 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || |||||||||||| || ||| ||| | |||| |||| ||| || | ||||||||| Sbjct 6325 ATTCCCTCCTTGTCCTGAATCTTCGCCTTAACGTTG-TCGATGGTATCTGAACTCTCGAC 6383 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| || | ||| || ||||| || ||||| || || |||||||| Sbjct 6384 CTCGAGAGTGATCGTCTTACCGGTTAGGGTTTTAACGAAGATCTGCAT 6431 Score = 122 bits (134), Expect = 8e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || |||||||| |||||| | | || || || || |||||||| || Sbjct 6463 GTGGACTCCTTCTGAATATTATAATCGGCAAGTGTACGGCCGTCCTCAAGCTGTTTACCG 6522 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || | || | ||||||||||| ||||| ||||| |||||||| ||| || |||| Sbjct 6523 GCAAATATGAGACGCTGCTGATCCGGAGGGATGCCTTCCTTGTCTTGGATCTTAGTCTTG 6582 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| ||| || | |||||||||||||| || | || || ||||| || ||| Sbjct 6583 ACATTATCGATGGTATCGGAACTCTCGACTTCGAGAGTAATTGTCTTACCGGTTAGGGTT 6642 Query 127097 TTTACAAAAATCTGCAT 127113 || ||||| |||||||| Sbjct 6643 TTGACAAAGATCTGCAT 6659 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | | ||| || | ||||| |||||||| || || ||||| |||||| || Sbjct 5749 CCACCGCGAAGCCTCAAGACGAGATGTAAGGTAGACTCCTTCTGGATATTATAATCGGCC 5808 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || | || || | ||| || || || |||||| ||||||||||| ||||| Sbjct 5809 AAGGTTCTCCCGTCTTCCAACTGCTTCCCGGCAAAGATCAGGCGCTGCTGATCAGGAGGG 5868 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || ||||||||| || || ||| | |||| |||| || || | ||||||||| Sbjct 5869 ATCCCTTCCTTGTCCTGAATCTTAGCCTTAACGTTG-TCGATTGTATCAGAACTCTCGAC 5927 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| | ||| | || || || || |||||||| ||||| || ||||| Sbjct 5928 TTCCAAGGTAATAGTCTTACCTGTGAGAGTTTTGACAAATATTTGCAT 5975 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | | ||| || | ||| | |||||||| || ||||| ||||| ||| || Sbjct 5977 CCACCGCGGAGCCTCAAAACAAGATGAAGGGTAGACTCCTTCTGAATGTTGTAGTCGGCC 6036 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || | || || | ||| || || ||| ||||||| ||||||||||| ||||| Sbjct 6037 AAAGTTCTGCCGTCTTCCAACTGCTTACCGGCGAAGATCAAGCGCTGCTGATCAGGAGGA 6096 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || ||||| ||| || || ||| | |||| |||| || || | ||| ||||| Sbjct 6097 ATTCCTTCCTTATCCTGAATCTTAGCCTTAACGTTG-TCGATAGTATCAGAACTTTCGAC 6155 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| | ||| | ||| || ||||| || ||||| ||||| || ||||| Sbjct 6156 TTCCAAGGTGATCGTCTTACCGGTGAGGGTTTTGACAAATATTTGCAT 6203 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || ||||| |||||||| | | ||||| ||| ||||| || || ||| Sbjct 5323 GTGGACTCCTTCTGAATGTTGTAATCAGCAAGGGTGCGCCCATCCTCTAGTTGCTTCCCA 5382 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || | || | | ||||||||| || || || |||||||||||| || || ||| Sbjct 5383 GCAAAAATGAGCCTCTGCTGATCCGGGGGAATCCCCTCCTTGTCCTGAATCTTGGACTTC 5442 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | |||||| | ||||| ||||| | || | || || || |||| || Sbjct 5443 ACATTATCTATGGTGTCTGAGCTCTCTACTTCAAGTGTAATGGTCTTCCCAGTCAATGTC 5502 Query 127097 TTTACAAAAATCTGCAT 127113 || |||||||||||||| Sbjct 5503 TTCACAAAAATCTGCAT 5519 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| ||||| || | || ||||| ||||| || || |||||| ||| || || Sbjct 5533 CGCAGCACCAGGTGAAGGGTGGACTCCTTTTGTATGTTATAATCGGCCAATGTTCGTCCG 5592 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || | ||||||||||| | || | || ||| || || || || || || ||||| Sbjct 5593 TCCTCCAATTGTTTTCCAGCAAAAATAAGTCTCTGTTGGTCCGGGGGAATCCCTTCCTTA 5652 Query 127019 TCCGTGATTTTCTG-CTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 | | ||| ||| || ||||| | |||| ||| || | ||| || || || | || | Sbjct 5653 T-CTTGAATTTTTGCCTTGACGTTATCGATGGTATCAGAACTTTCAACCTCAAGAGTAAT 5711 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| || || || |||||||| ||||| || ||||| Sbjct 5712 CGTCTTACCTGTGAGAGTTTTAACAAATATTTGCAT 5747 >seq31911 Length=2244 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | |||||| || | || || || || || || |||||||| | Sbjct 1279 CCACCACGAAGACGAAGCACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAATCAGCG 1338 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| || ||||| || ||||| ||||||||| |||||| || || || Sbjct 1339 AGGGTACGCCCATCTTCAAGCTGCTTACCAGCAAAGATCAATCTCTGCTGGTCTGGGGGG 1398 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || |||||||| ||| ||| ||| | | || | || || | |||||||| Sbjct 1399 ATCCCTTCCTTGTCTTGGATCTTCGCCTTAACATTGTCTATCGTATCAGAGCTCTCGACC 1458 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| || | ||||| ||||| || ||||| || ||||||||||| Sbjct 1459 TCGAGAGTAATTGTTTTTCCGGTGAGGGTTTTCACGAAAATCTGCAT 1505 >seq31910 Length=2189 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | |||||| || | || || || || || || |||||||| | Sbjct 1270 CCACCACGAAGACGAAGCACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAATCAGCG 1329 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| || ||||| || ||||| ||||||| | |||||| || || || Sbjct 1330 AGGGTACGGCCATCTTCAAGCTGCTTACCAGCAAAGATCAACCTCTGCTGGTCTGGGGGA 1389 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || |||||||| ||| ||| ||| | | || | || || | |||||||| Sbjct 1390 ATCCCTTCCTTGTCTTGGATCTTCGCCTTAACATTGTCTATCGTATCAGAGCTCTCGACC 1449 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| || | ||||| ||||| || ||||| |||||||||||||| Sbjct 1450 TCGAGAGTAATTGTTTTTCCGGTGAGGGTTTTCACAAAAATCTGCAT 1496 >seq23310 Length=1212 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||||||||| ||||| || || | | || || |||||| |||||||| ||| Sbjct 510 GTGGACTCTTTTTGGATATTATAGTCAGCAAGGGTTCGTCCATCGTCGAGCTGTTTGCCA 569 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| | |||| ||||||||||| ||||| ||||| ||||||||| || || ||| Sbjct 570 GCGAAAATCAGACGCTGCTGATCTGGAGGAATGCCTTCCTTGTCCTGAATCTTGGCCTTA 629 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | ||||| | ||||| ||||| | || | || || || |||| || Sbjct 630 ACATTGTCAATAGTGTCTGAGCTCTCCACTTCCAAAGTAATGGTCTTCCCAGTCAATGTC 689 Query 127097 TTTACAAAAATCTGCATG 127114 || || || ||||||||| Sbjct 690 TTCACGAATATCTGCATG 707 >seq42083 Length=68989 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || |||||||| || |||||||||| ||| | || ||||| || || || || ||||| Sbjct 15131 GCACCACCGCGCAAGCGCAACACCAGATGCAAGGTTGACTCCTTCTGGATGTTATAATCA 15190 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 | | || | || || ||||| || || ||| |||| | ||||||||||| || Sbjct 15191 GCTAGGGTCCTGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGATCTGGC 15250 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || ||||||||||| ||| || || ||||| | || | ||| || | ||| Sbjct 15251 GGGATGCCCTCCTTATCCTGTATCTTAGCCTTGACATTGTCAATGGTATCGGAGGACTCA 15310 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || | || | || || ||||| || ||||| || || |||||||| Sbjct 15311 ACCTCCAAAGTAATGGTCTTACCGGTTAGGGTTTTCACGAAGATCTGCAT 15360 >seq4370 Length=4242 Score = 93.3 bits (102), Expect = 4e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963 |||||| || | || || || || || || || ||||| ||| ||||| ||| || Sbjct 3009 CACCAAGTGCAGGGTGGATTCCTTCTGGATGTTATAATCTGCCAGGGTGCGGCCATCTTC 3068 Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023 ||||| || || ||| ||||||| | |||||| || || || || |||||||||||| Sbjct 3069 AAGCTGCTTACCGGCGAAGATCAACCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCCTG 3128 Query 127024 GATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083 |||||| ||| | | || | || || | || || || || | || | || || Sbjct 3129 GATTTTAGCCTTAACATTATCAATTGTATCGGAGCTTTCCACCTCCAAAGTAATTGTCTT 3188 Query 127084 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 ||||| || ||||| || || ||||||||| Sbjct 3189 TCCGGTGAGGGTTTTGACGAAGATCTGCATG 3219 >seq24190 Length=3131 Score = 86.0 bits (94), Expect = 6e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || |||||||| | || | |||| ||| | || ||||| || || || |||||||| Sbjct 1483 GCACCACCGCGCAGACGGAGAACCAGATGCAGGGTTGACTCCTTCTGGATGTTGTAATCC 1424 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 | | || | ||| || ||||| ||||| ||| |||| | ||||||||||| || Sbjct 1423 GCTAGGGTCCTGCCATCCTCGAGCTGCTTTCCGGCGAAGATGAGCCGCTGCTGATCTGGT 1364 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || || || |||||||| |||||| ||||| | || | |||||| | || Sbjct 1363 GGAATTCCTTCCTTGTCTTGGATTTTAGCCTTGACATTGTCAATGGTGTCGGAGGATTCA 1304 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || | || | || || || || || ||||| || || |||||||| Sbjct 1303 ACCTCCAGAGTAATTGTCTTACCCGTTAGGGTTTTGACGAAGATCTGCAT 1254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 474182147125200